Variant report

Variant	rs1253930
Chromosome Location	chr10:44914676-44914677
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs11239048	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1147921	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1147923	1.00[ASN][1000 genomes]
rs1147924	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1147926	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1147932	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1147935	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1253720	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1253721	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1253722	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1253723	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1253731	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1253732	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1253733	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1253734	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1253735	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1253736	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1253743	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1253745	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1253747	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1253928	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1253929	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1253931	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1253932	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1253933	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1253941	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1253942	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1253945	0.90[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1253946	0.88[EUR][1000 genomes]
rs1272678	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1419282	0.88[EUR][1000 genomes]
rs1591285	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1628283	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1761316	0.95[ASN][1000 genomes]
rs1761325	0.88[EUR][1000 genomes]
rs1761331	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1761334	0.88[EUR][1000 genomes]
rs1761347	0.88[EUR][1000 genomes]
rs1779343	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1779380	0.88[EUR][1000 genomes]
rs1892034	0.88[EUR][1000 genomes]
rs1892035	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1892037	0.90[ASN][1000 genomes]
rs2781548	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2781549	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2799712	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs915082	0.90[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895101	chr10:44909081-45007131	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv550701	chr10:44913113-44935055	Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44907000-44918400	Weak transcription	Right Atrium	heart
2	chr10:44912200-44919800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:44912600-44915400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr10:44912600-44915600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr10:44913000-44918400	Weak transcription	Fetal Lung	lung
6	chr10:44914200-44915800	Enhancers	Pancreas	Pancrea
7	chr10:44914600-44915600	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr10:44914600-44916000	Enhancers	Fetal Muscle Leg	muscle

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