Variant report

Variant	rs1272678
Chromosome Location	chr10:44934401-44934402
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs1023260	0.86[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs11239048	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1147921	0.98[EUR][1000 genomes]
rs1147924	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1147926	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1147930	0.98[ASN][1000 genomes]
rs1147931	0.98[ASN][1000 genomes]
rs1147932	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1147935	0.97[EUR][1000 genomes]
rs1147954	0.97[ASN][1000 genomes]
rs1147957	0.96[ASN][1000 genomes]
rs1147961	0.96[ASN][1000 genomes]
rs1147962	0.96[ASN][1000 genomes]
rs1253714	0.96[ASN][1000 genomes]
rs1253718	0.97[ASN][1000 genomes]
rs1253720	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1253721	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1253722	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1253723	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1253731	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1253732	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1253733	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1253734	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1253735	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1253736	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1253743	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1253745	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1253747	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1253928	0.94[CEU][hapmap];0.81[CHB][hapmap];0.81[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1253929	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1253930	0.95[CEU][hapmap];0.82[CHB][hapmap];0.82[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1253931	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1253932	0.94[CEU][hapmap];0.81[CHB][hapmap];0.81[JPT][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1253933	0.94[CEU][hapmap];0.81[CHB][hapmap];0.81[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1253941	0.94[CEU][hapmap];0.81[CHB][hapmap];0.80[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1253942	0.95[CEU][hapmap];0.82[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1253945	0.85[CEU][hapmap];0.81[JPT][hapmap];0.88[EUR][1000 genomes]
rs1253946	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1266391	0.97[ASN][1000 genomes]
rs1419282	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1591285	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1628283	0.86[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs1761325	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1761331	0.86[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs1761334	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1761347	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1779343	0.86[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs1779380	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1779381	0.93[ASN][1000 genomes]
rs1779383	0.92[ASN][1000 genomes]
rs1892034	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1892035	0.86[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs2096331	0.90[ASN][1000 genomes]
rs2781548	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2781549	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2799712	0.87[EUR][1000 genomes]
rs3908776	0.86[ASN][1000 genomes]
rs750011	0.98[ASN][1000 genomes]
rs915082	0.85[CEU][hapmap];0.82[JPT][hapmap];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895101	chr10:44909081-45007131	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv550701	chr10:44913113-44935055	Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44932200-44935800	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr10:44933200-44934800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
3	chr10:44933400-44934800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr10:44933400-44934800	Enhancers	Fetal Thymus	thymus
5	chr10:44933400-44935000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr10:44933400-44936200	Enhancers	Fetal Lung	lung
7	chr10:44933600-44934800	Enhancers	Osteobl	bone
8	chr10:44933600-44935200	Enhancers	Fetal Muscle Leg	muscle
9	chr10:44934000-44934600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr10:44934000-44935000	Enhancers	Adipose Nuclei	Adipose
11	chr10:44934000-44935200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr10:44934200-44935000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr10:44934400-44934600	Bivalent Enhancer	Fetal Stomach	stomach
14	chr10:44934400-44934800	Enhancers	Fetal Muscle Trunk	muscle
15	chr10:44934400-44935000	Enhancers	Placenta	Placenta
16	chr10:44934400-44935800	Enhancers	Ovary	ovary

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