Variant report

Variant	rs1147931
Chromosome Location	chr10:44922347-44922348
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1023260	0.94[ASN][1000 genomes]
rs11239048	0.98[ASN][1000 genomes]
rs1147923	0.99[EUR][1000 genomes]
rs1147924	1.00[ASN][1000 genomes]
rs1147926	1.00[ASN][1000 genomes]
rs1147930	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1147932	0.98[ASN][1000 genomes]
rs1147954	0.95[ASN][1000 genomes]
rs1147957	0.95[ASN][1000 genomes]
rs1147961	0.95[ASN][1000 genomes]
rs1147962	0.95[ASN][1000 genomes]
rs1253714	0.95[ASN][1000 genomes]
rs1253718	0.95[ASN][1000 genomes]
rs1253720	0.97[ASN][1000 genomes]
rs1253721	0.96[ASN][1000 genomes]
rs1253722	0.96[ASN][1000 genomes]
rs1253723	0.98[ASN][1000 genomes]
rs1253731	0.98[ASN][1000 genomes]
rs1253732	0.98[ASN][1000 genomes]
rs1253733	0.98[ASN][1000 genomes]
rs1253734	0.96[ASN][1000 genomes]
rs1253735	0.98[ASN][1000 genomes]
rs1253736	0.98[ASN][1000 genomes]
rs1253743	0.98[ASN][1000 genomes]
rs1253745	0.98[ASN][1000 genomes]
rs1253747	0.98[ASN][1000 genomes]
rs1253931	0.99[ASN][1000 genomes]
rs1253946	0.96[ASN][1000 genomes]
rs1266391	0.95[ASN][1000 genomes]
rs1272678	0.98[ASN][1000 genomes]
rs1419282	0.94[ASN][1000 genomes]
rs1591285	0.96[ASN][1000 genomes]
rs1761325	0.94[ASN][1000 genomes]
rs1761334	0.97[ASN][1000 genomes]
rs1761347	0.97[ASN][1000 genomes]
rs1779380	0.94[ASN][1000 genomes]
rs1779381	0.94[ASN][1000 genomes]
rs1779383	0.94[ASN][1000 genomes]
rs1892034	0.97[ASN][1000 genomes]
rs2096331	0.92[ASN][1000 genomes]
rs2781548	0.98[ASN][1000 genomes]
rs2781549	0.98[ASN][1000 genomes]
rs3908776	0.84[ASN][1000 genomes]
rs750011	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895101	chr10:44909081-45007131	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv550701	chr10:44913113-44935055	Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv971848	chr10:44919928-44923611	ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44919800-44922800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
2	chr10:44920000-44922400	Enhancers	Fetal Muscle Leg	muscle
3	chr10:44920000-44922800	Enhancers	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links