Variant report

Variant	rs1023260
Chromosome Location	chr10:44895687-44895688
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs11239048	0.93[ASN][1000 genomes]
rs1147924	0.95[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs1147926	0.94[ASN][1000 genomes]
rs1147930	0.94[ASN][1000 genomes]
rs1147931	0.94[ASN][1000 genomes]
rs1147932	0.91[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs1147954	0.90[ASN][1000 genomes]
rs1147957	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1147961	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1147962	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1253714	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1253718	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1253720	0.86[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs1253721	0.81[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs1253722	0.86[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs1253723	0.91[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs1253731	0.93[ASN][1000 genomes]
rs1253732	0.81[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs1253733	0.93[ASN][1000 genomes]
rs1253734	0.91[ASN][1000 genomes]
rs1253735	0.93[ASN][1000 genomes]
rs1253736	0.93[ASN][1000 genomes]
rs1253743	0.93[ASN][1000 genomes]
rs1253745	0.81[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs1253747	0.81[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs1253930	0.81[JPT][hapmap]
rs1253931	0.91[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs1253942	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs1253945	0.85[CEU][hapmap];0.81[CHB][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1253946	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1266391	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1272678	0.86[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs1419282	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1591285	0.81[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs1628283	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1761316	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1761325	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1761331	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs1761334	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1761347	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1779343	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1779380	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1779381	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1779383	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1892034	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1892035	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1892037	0.87[EUR][1000 genomes]
rs2096331	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2781548	0.93[ASN][1000 genomes]
rs2781549	0.93[ASN][1000 genomes]
rs2799712	0.89[EUR][1000 genomes]
rs750011	0.94[ASN][1000 genomes]
rs915082	0.85[CEU][hapmap];0.82[CHB][hapmap];0.81[JPT][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44891000-44896000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:44891800-44895800	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr10:44892000-44898400	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr10:44892400-44896000	Enhancers	H1 Cell Line	embryonic stem cell
5	chr10:44892400-44896600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr10:44893600-44896400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr10:44894200-44895800	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr10:44895000-44895800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr10:44895000-44896200	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr10:44895000-44896400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr10:44895200-44895800	Enhancers	H9 Cell Line	embryonic stem cell
12	chr10:44895200-44896000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr10:44895400-44895800	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr10:44895400-44896000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
15	chr10:44895400-44896000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
16	chr10:44895600-44896000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr10:44895600-44896000	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell

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