Variant report

Variant	rs1761331
Chromosome Location	chr10:32182036-32182037
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs1023260	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs11239048	0.84[EUR][1000 genomes]
rs1147921	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1147923	0.96[ASN][1000 genomes]
rs1147924	0.95[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs1147926	0.85[EUR][1000 genomes]
rs1147932	0.91[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs1147935	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1253720	0.86[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs1253721	0.81[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs1253722	0.86[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs1253723	0.91[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs1253731	0.85[EUR][1000 genomes]
rs1253732	0.81[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs1253733	0.85[EUR][1000 genomes]
rs1253734	0.85[EUR][1000 genomes]
rs1253735	0.85[EUR][1000 genomes]
rs1253736	0.85[EUR][1000 genomes]
rs1253743	0.85[EUR][1000 genomes]
rs1253745	0.81[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs1253747	0.81[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs1253928	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1253929	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1253930	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1253931	0.91[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs1253932	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1253933	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1253941	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1253942	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1253945	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1253946	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1272678	0.86[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs1419282	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1591285	0.81[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs1628283	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1761316	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1761325	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1761334	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1761347	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1779343	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1779380	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1779381	0.87[EUR][1000 genomes]
rs1779383	0.85[EUR][1000 genomes]
rs1892034	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1892035	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1892037	0.91[ASN][1000 genomes]
rs2781548	0.85[EUR][1000 genomes]
rs2781549	0.85[EUR][1000 genomes]
rs2799712	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs915082	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:32150600-32189400	Weak transcription	Primary T cells from cord blood	blood
2	chr10:32150600-32194200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr10:32160600-32186200	Weak transcription	Pancreas	Pancrea
4	chr10:32160600-32194200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr10:32161000-32186200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr10:32163000-32190600	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr10:32166800-32185600	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr10:32167000-32183400	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr10:32167000-32185800	Weak transcription	Placenta	Placenta
10	chr10:32168400-32190000	Weak transcription	Liver	Liver
11	chr10:32170400-32185600	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr10:32170400-32189800	Weak transcription	Fetal Intestine Small	intestine
13	chr10:32170800-32194800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr10:32171600-32186400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr10:32172400-32189000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr10:32172800-32186200	Weak transcription	Lung	lung
17	chr10:32173000-32189200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr10:32173000-32189200	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr10:32173000-32190000	Weak transcription	Primary hematopoietic stem cells	blood
20	chr10:32173000-32190000	Weak transcription	Fetal Intestine Large	intestine
21	chr10:32173000-32197000	Weak transcription	Primary monocytes fromperipheralblood	blood
22	chr10:32173000-32201800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr10:32173600-32187400	Weak transcription	Primary B cells from cord blood	blood
24	chr10:32174200-32197600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr10:32176400-32185400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr10:32177200-32185600	Weak transcription	Left Ventricle	heart
27	chr10:32177400-32185400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr10:32177400-32185600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr10:32177600-32185400	Weak transcription	Brain Hippocampus Middle	brain
30	chr10:32177600-32185400	Weak transcription	NHDF-Ad	bronchial
31	chr10:32177800-32185400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr10:32177800-32185400	Weak transcription	Colon Smooth Muscle	Colon
33	chr10:32177800-32185400	Weak transcription	Fetal Heart	heart
34	chr10:32177800-32185400	Weak transcription	HSMM	muscle
35	chr10:32177800-32189000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr10:32178000-32185600	Weak transcription	Right Ventricle	heart
37	chr10:32178400-32185400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr10:32178400-32202000	Weak transcription	Brain Anterior Caudate	brain
39	chr10:32179400-32197000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
40	chr10:32179800-32185200	Weak transcription	A549	lung
41	chr10:32180200-32185800	Weak transcription	HUES64 Cell Line	embryonic stem cell

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