Variant report

Variant	rs1253720
Chromosome Location	chr10:44936095-44936096
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs1023260	0.86[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs11239048	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1147921	0.99[EUR][1000 genomes]
rs1147924	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1147926	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1147930	0.97[ASN][1000 genomes]
rs1147931	0.97[ASN][1000 genomes]
rs1147932	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1147935	0.98[EUR][1000 genomes]
rs1147954	0.96[ASN][1000 genomes]
rs1147957	0.95[ASN][1000 genomes]
rs1147961	0.95[ASN][1000 genomes]
rs1147962	0.95[ASN][1000 genomes]
rs1253714	0.95[ASN][1000 genomes]
rs1253718	0.96[ASN][1000 genomes]
rs1253721	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1253722	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1253723	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1253731	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1253732	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1253733	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1253734	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1253735	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1253736	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1253743	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1253745	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1253747	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1253928	0.94[CEU][hapmap];0.81[CHB][hapmap];0.81[JPT][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1253929	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1253930	0.95[CEU][hapmap];0.82[CHB][hapmap];0.82[JPT][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1253931	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1253932	0.94[CEU][hapmap];0.81[CHB][hapmap];0.81[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1253933	0.94[CEU][hapmap];0.81[CHB][hapmap];0.81[JPT][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1253941	0.94[CEU][hapmap];0.81[CHB][hapmap];0.80[JPT][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1253942	0.95[CEU][hapmap];0.82[JPT][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1253945	0.85[CEU][hapmap];0.81[JPT][hapmap];0.89[EUR][1000 genomes]
rs1253946	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1266391	0.96[ASN][1000 genomes]
rs1272678	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1419282	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1591285	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1628283	0.86[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs1761325	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1761331	0.86[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs1761334	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1761347	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1779343	0.86[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs1779380	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1779381	0.92[ASN][1000 genomes]
rs1779383	0.91[ASN][1000 genomes]
rs1892034	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1892035	0.86[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs2096331	0.89[ASN][1000 genomes]
rs2781548	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2781549	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2799712	0.88[EUR][1000 genomes]
rs3908776	0.85[ASN][1000 genomes]
rs750011	0.97[ASN][1000 genomes]
rs915082	0.85[CEU][hapmap];0.82[JPT][hapmap];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895101	chr10:44909081-45007131	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44933400-44936200	Enhancers	Fetal Lung	lung
2	chr10:44934600-44936200	Enhancers	Spleen	Spleen
3	chr10:44936000-44936200	Bivalent Enhancer	Brain Substantia Nigra	brain

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