Variant report

Variant	rs12544937
Chromosome Location	chr8:51369034-51369035
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11775411	0.91[ASN][1000 genomes]
rs12543175	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12545254	0.89[ASN][1000 genomes]
rs12546758	0.90[ASN][1000 genomes]
rs13248847	0.90[ASN][1000 genomes]
rs13251708	0.83[ASN][1000 genomes]
rs13258865	0.91[ASN][1000 genomes]
rs13274680	0.91[ASN][1000 genomes]
rs1481472	0.91[ASN][1000 genomes]
rs1483636	0.89[ASN][1000 genomes]
rs1483645	0.87[ASN][1000 genomes]
rs1542613	0.89[ASN][1000 genomes]
rs1542615	0.89[ASN][1000 genomes]
rs192844	0.89[ASN][1000 genomes]
rs1971259	0.89[ASN][1000 genomes]
rs2068238	0.90[ASN][1000 genomes]
rs2392699	0.89[ASN][1000 genomes]
rs2623207	0.87[ASN][1000 genomes]
rs2623215	0.87[ASN][1000 genomes]
rs2625739	0.89[ASN][1000 genomes]
rs2625750	0.87[ASN][1000 genomes]
rs2625751	0.87[ASN][1000 genomes]
rs2625753	0.87[ASN][1000 genomes]
rs310557	0.89[ASN][1000 genomes]
rs4577970	0.89[ASN][1000 genomes]
rs4873149	0.91[ASN][1000 genomes]
rs6997739	0.81[EUR][1000 genomes]
rs7007612	0.90[ASN][1000 genomes]
rs7836540	0.91[ASN][1000 genomes]
rs996523	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916392	chr8:50827638-51395140	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv948436	chr8:51115028-51917504	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv831312	chr8:51239772-51422844	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv916262	chr8:51322341-51437077	ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv520800	chr8:51365953-51371910	Weak transcription Bivalent Enhancer Enhancers Strong transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:51364800-51369800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr8:51365800-51375800	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr8:51369000-51370600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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