Variant report

Variant	rs11775411
Chromosome Location	chr8:51371650-51371651
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs10090468	0.90[EUR][1000 genomes]
rs1017841	0.89[CEU][hapmap];0.91[CHB][hapmap];0.88[YRI][hapmap]
rs10957915	0.82[CHB][hapmap];0.90[EUR][1000 genomes]
rs10957916	0.82[CHB][hapmap];0.88[YRI][hapmap];0.90[EUR][1000 genomes]
rs1114500	0.82[CEU][hapmap]
rs11995834	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[YRI][hapmap]
rs12543175	0.91[ASN][1000 genomes]
rs12544937	0.91[ASN][1000 genomes]
rs12545254	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12546744	0.90[EUR][1000 genomes]
rs12546758	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13248847	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13251708	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13258865	1.00[CEU][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13266691	0.92[EUR][1000 genomes]
rs13274680	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1383818	0.90[CHB][hapmap];1.00[YRI][hapmap]
rs1383820	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1471577	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1471578	0.87[CEU][hapmap];0.90[CHB][hapmap];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1481472	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1481475	0.89[CEU][hapmap];0.91[CHB][hapmap];0.88[YRI][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1481482	0.80[AMR][1000 genomes]
rs1483636	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1483643	0.80[AMR][1000 genomes]
rs1483644	0.82[CEU][hapmap];0.80[AMR][1000 genomes]
rs1483645	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1542613	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1542615	1.00[CEU][hapmap];0.90[CHB][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs192844	0.91[CHB][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1971259	1.00[CEU][hapmap];0.90[CHB][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2062038	0.83[CHB][hapmap];0.88[YRI][hapmap];0.90[EUR][1000 genomes]
rs2068238	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2251415	0.82[CEU][hapmap];0.80[AMR][1000 genomes]
rs2392627	0.82[CHB][hapmap];0.88[YRI][hapmap];0.92[EUR][1000 genomes]
rs2392699	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2623207	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2623211	0.80[AMR][1000 genomes]
rs2623215	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2623216	0.80[AMR][1000 genomes]
rs2623224	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2623225	0.80[AMR][1000 genomes]
rs2625739	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2625750	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2625751	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2625752	0.80[AMR][1000 genomes]
rs2625753	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2625755	0.80[AMR][1000 genomes]
rs2930096	0.80[AMR][1000 genomes]
rs310557	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs310562	0.93[YRI][hapmap]
rs310570	1.00[CEU][hapmap]
rs310574	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[YRI][hapmap]
rs310576	0.94[YRI][hapmap]
rs4440649	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[YRI][hapmap]
rs4577970	0.91[CHB][hapmap];0.93[YRI][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4873147	0.87[CEU][hapmap];0.90[CHB][hapmap];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4873149	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4873457	0.82[CHB][hapmap];0.88[YRI][hapmap];0.90[EUR][1000 genomes]
rs4873458	0.87[CEU][hapmap];0.90[CHB][hapmap];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4873459	0.94[EUR][1000 genomes]
rs6473144	0.89[CEU][hapmap];0.91[CHB][hapmap];0.88[YRI][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6983589	0.83[CHB][hapmap];0.88[YRI][hapmap];0.92[EUR][1000 genomes]
rs7007612	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7015139	0.82[CHB][hapmap];0.82[YRI][hapmap];0.90[EUR][1000 genomes]
rs7817955	0.87[CEU][hapmap];0.90[CHB][hapmap];0.88[YRI][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7826421	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[YRI][hapmap]
rs7836540	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7842092	0.83[CHB][hapmap];0.88[YRI][hapmap]
rs9298323	0.82[CHB][hapmap]
rs9650165	0.82[CHB][hapmap];0.88[YRI][hapmap];0.90[EUR][1000 genomes]
rs9650166	0.83[CHB][hapmap];0.88[YRI][hapmap];0.90[EUR][1000 genomes]
rs996523	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs996524	0.82[CEU][hapmap];0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916392	chr8:50827638-51395140	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv948436	chr8:51115028-51917504	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv831312	chr8:51239772-51422844	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv916262	chr8:51322341-51437077	ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv520800	chr8:51365953-51371910	Weak transcription Bivalent Enhancer Enhancers Strong transcription	n/a	n/a	inside rSNPs	diseases
6	nsv429914	chr8:51371447-51617647	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:51365800-51375800	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr8:51370600-51374400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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