Variant report

Variant	rs10957916
Chromosome Location	chr8:51348821-51348822
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 89 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs10090266	0.92[CHB][hapmap];0.87[ASN][1000 genomes]
rs10090468	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10101856	0.92[CHB][hapmap];0.87[ASN][1000 genomes]
rs1017841	0.92[CHB][hapmap];1.00[YRI][hapmap]
rs10808829	1.00[CEU][hapmap];0.86[CHB][hapmap];0.88[JPT][hapmap];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10957909	0.87[ASN][1000 genomes]
rs10957914	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs10957915	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10957927	0.81[ASN][1000 genomes]
rs1114500	0.86[CHB][hapmap]
rs1114808	0.86[CHB][hapmap]
rs11775411	0.82[CHB][hapmap];0.88[YRI][hapmap];0.90[EUR][1000 genomes]
rs11781401	0.86[CHB][hapmap]
rs11783146	0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11995834	0.92[CHB][hapmap];0.88[YRI][hapmap]
rs12216754	0.92[CHB][hapmap];0.90[ASN][1000 genomes]
rs12541766	0.92[CHB][hapmap];0.86[ASN][1000 genomes]
rs12546744	0.91[CEU][hapmap];0.81[CHB][hapmap];0.95[EUR][1000 genomes]
rs12546758	0.92[CHB][hapmap];0.88[YRI][hapmap];0.81[EUR][1000 genomes]
rs13248847	0.81[EUR][1000 genomes]
rs13258865	0.86[CHB][hapmap];0.90[EUR][1000 genomes]
rs13266691	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13274680	0.92[CHB][hapmap];0.88[YRI][hapmap];0.90[EUR][1000 genomes]
rs1383818	0.92[CHB][hapmap];0.82[LWK][hapmap];0.88[YRI][hapmap]
rs1383820	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1471577	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1471578	0.92[CHB][hapmap];0.89[CHD][hapmap];0.90[GIH][hapmap];0.89[MEX][hapmap];0.96[TSI][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1481469	0.92[CHB][hapmap];0.86[ASN][1000 genomes]
rs1481472	0.92[CHB][hapmap];0.83[LWK][hapmap];0.84[MEX][hapmap];0.85[MKK][hapmap];0.96[TSI][hapmap];0.88[YRI][hapmap];0.90[EUR][1000 genomes]
rs1481475	0.92[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1481476	0.92[CHB][hapmap];0.86[ASN][1000 genomes]
rs1481477	0.92[CHB][hapmap];0.86[ASN][1000 genomes]
rs1481482	0.86[CHB][hapmap];0.83[TSI][hapmap]
rs1483643	0.86[CHB][hapmap];0.83[TSI][hapmap]
rs1483644	0.86[CHB][hapmap]
rs1542615	0.92[CHB][hapmap];0.83[MEX][hapmap];0.96[TSI][hapmap]
rs1904997	0.86[CHB][hapmap]
rs192844	0.92[CHB][hapmap];0.88[YRI][hapmap]
rs1971259	0.92[CHB][hapmap];0.84[MEX][hapmap];0.96[TSI][hapmap]
rs1994031	0.86[CHB][hapmap];0.83[TSI][hapmap]
rs2062038	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2068238	0.92[CHB][hapmap];0.88[YRI][hapmap];0.81[EUR][1000 genomes]
rs2128000	0.86[CHB][hapmap]
rs2170373	0.91[CEU][hapmap];0.83[EUR][1000 genomes]
rs2251415	0.86[CHB][hapmap]
rs2392627	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2392699	0.92[CHB][hapmap];0.83[CHD][hapmap];0.82[MEX][hapmap];0.82[MKK][hapmap];0.96[TSI][hapmap];0.88[YRI][hapmap];0.81[EUR][1000 genomes]
rs2448941	0.86[CHB][hapmap]
rs2467205	0.86[CHB][hapmap]
rs2623207	0.92[CHB][hapmap];0.84[MEX][hapmap];0.85[MKK][hapmap];0.93[TSI][hapmap];0.88[YRI][hapmap]
rs2623224	0.92[CHB][hapmap];0.85[MKK][hapmap];0.83[TSI][hapmap];0.88[YRI][hapmap]
rs2623225	0.86[CHB][hapmap]
rs2625736	0.86[CHB][hapmap]
rs2625739	0.92[CHB][hapmap];0.88[YRI][hapmap]
rs310557	0.81[EUR][1000 genomes]
rs310558	0.86[CHB][hapmap]
rs310562	0.82[YRI][hapmap]
rs310574	0.92[CHB][hapmap];0.83[LWK][hapmap];0.85[MKK][hapmap];0.96[TSI][hapmap];0.88[YRI][hapmap]
rs310576	0.82[YRI][hapmap]
rs3919897	0.92[CHB][hapmap];0.87[ASN][1000 genomes]
rs4440649	0.92[CHB][hapmap];0.83[LWK][hapmap];0.84[MEX][hapmap]
rs4442158	0.86[CHB][hapmap]
rs4538902	0.92[CHB][hapmap];0.86[ASN][1000 genomes]
rs4577970	0.92[CHB][hapmap];0.85[MKK][hapmap];0.96[TSI][hapmap];0.82[YRI][hapmap];0.81[EUR][1000 genomes]
rs4873147	0.92[CHB][hapmap];0.94[CHD][hapmap];0.83[GIH][hapmap];0.96[TSI][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4873149	0.92[CHB][hapmap];0.88[YRI][hapmap];0.90[EUR][1000 genomes]
rs4873457	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4873458	0.92[CHB][hapmap];0.95[CHD][hapmap];0.83[GIH][hapmap];0.89[MEX][hapmap];0.96[TSI][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4873459	0.86[CHB][hapmap];0.91[EUR][1000 genomes]
rs6473124	0.92[CHB][hapmap];0.86[ASN][1000 genomes]
rs6473144	0.92[CHB][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6983589	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7015139	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7817955	1.00[ASW][hapmap];0.92[CHB][hapmap];0.95[CHD][hapmap];0.90[GIH][hapmap];1.00[LWK][hapmap];0.94[MEX][hapmap];1.00[MKK][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7826421	0.92[CHB][hapmap];0.88[YRI][hapmap]
rs7827319	0.86[CHB][hapmap]
rs7839067	1.00[CEU][hapmap];0.86[CHB][hapmap];0.86[CHD][hapmap];0.88[JPT][hapmap];0.80[MEX][hapmap];0.93[TSI][hapmap];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7842092	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9298323	1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.88[JPT][hapmap];0.84[YRI][hapmap];1.00[ASN][1000 genomes]
rs9643435	0.92[CHB][hapmap];0.87[ASN][1000 genomes]
rs9650165	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9650166	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs996523	0.92[CHB][hapmap];0.88[YRI][hapmap]
rs996524	0.86[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916392	chr8:50827638-51395140	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv948436	chr8:51115028-51917504	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv831312	chr8:51239772-51422844	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv916262	chr8:51322341-51437077	ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv2521416	chr8:51348603-51350140	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:51347800-51349200	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr8:51347800-51349200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr8:51348200-51349600	Enhancers	Brain Germinal Matrix	brain
4	chr8:51348400-51356200	Weak transcription	Fetal Intestine Small	intestine
5	chr8:51348800-51350000	Weak transcription	Liver	Liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links