Variant report

Variant	rs2170373
Chromosome Location	chr8:51347477-51347478
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10090468	0.83[EUR][1000 genomes]
rs10808829	0.92[CEU][hapmap];0.83[CHB][hapmap];0.81[JPT][hapmap];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10957914	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10957915	0.91[CEU][hapmap];0.83[EUR][1000 genomes]
rs10957916	0.91[CEU][hapmap];0.83[EUR][1000 genomes]
rs10957927	0.87[ASN][1000 genomes]
rs1114500	0.83[CHB][hapmap]
rs1114808	0.82[CHB][hapmap]
rs11781401	0.82[CHB][hapmap]
rs12546744	1.00[CEU][hapmap];0.88[CHB][hapmap];0.91[JPT][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13258865	0.83[CHB][hapmap]
rs13266691	0.81[EUR][1000 genomes]
rs1383815	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1481467	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1481468	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs1481482	0.82[CHB][hapmap]
rs1483643	0.82[CHB][hapmap]
rs1483644	0.83[CHB][hapmap]
rs1904997	0.82[CHB][hapmap]
rs1994031	0.82[CHB][hapmap]
rs2062038	0.92[CEU][hapmap];0.83[EUR][1000 genomes]
rs2128000	0.83[CHB][hapmap]
rs2251415	0.83[CHB][hapmap]
rs2392627	0.91[CEU][hapmap];0.81[EUR][1000 genomes]
rs2448941	0.82[CHB][hapmap]
rs2467205	0.83[CHB][hapmap]
rs2623225	0.82[CHB][hapmap]
rs2625736	0.83[CHB][hapmap]
rs310558	0.83[CHB][hapmap]
rs4442158	0.83[CHB][hapmap]
rs4873457	0.91[CEU][hapmap];0.83[EUR][1000 genomes]
rs4873459	0.83[CHB][hapmap];0.81[JPT][hapmap];0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6983589	0.92[CEU][hapmap];0.81[EUR][1000 genomes]
rs6997739	1.00[CHB][hapmap];0.96[ASN][1000 genomes]
rs7015139	0.92[CEU][hapmap];0.83[EUR][1000 genomes]
rs7827319	0.83[CHB][hapmap]
rs7839067	0.91[CEU][hapmap];0.82[CHB][hapmap];0.98[EUR][1000 genomes]
rs9650165	0.91[CEU][hapmap];0.83[EUR][1000 genomes]
rs9650166	0.91[CEU][hapmap];0.83[EUR][1000 genomes]
rs996524	0.83[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916392	chr8:50827638-51395140	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv948436	chr8:51115028-51917504	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv831312	chr8:51239772-51422844	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv916262	chr8:51322341-51437077	ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:51343800-51347800	Weak transcription	Cortex derived primary cultured neurospheres	brain

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