Variant report

Variant	rs4442158
Chromosome Location	chr8:51379923-51379924
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs10090266	0.81[CHB][hapmap]
rs10101856	0.81[CHB][hapmap]
rs1017841	0.81[CHB][hapmap]
rs10808836	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10957914	1.00[CHB][hapmap]
rs10957915	0.86[CHB][hapmap]
rs10957916	0.86[CHB][hapmap]
rs10957927	0.87[ASN][1000 genomes]
rs1114500	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1114808	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11781401	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap]
rs11995834	0.81[CHB][hapmap]
rs12216754	0.81[CHB][hapmap]
rs12541766	0.81[CHB][hapmap]
rs12546744	0.94[CHB][hapmap];0.80[JPT][hapmap];0.84[ASN][1000 genomes]
rs12546758	0.81[CHB][hapmap]
rs13258865	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs13274680	0.81[CHB][hapmap]
rs13280990	0.92[AFR][1000 genomes]
rs1383815	0.82[CHB][hapmap]
rs1481467	0.82[CHB][hapmap]
rs1481468	0.83[CHB][hapmap]
rs1481469	0.81[CHB][hapmap]
rs1481475	0.81[CHB][hapmap]
rs1481476	0.81[CHB][hapmap]
rs1481477	0.81[CHB][hapmap]
rs1481482	1.00[CHB][hapmap];0.91[ASN][1000 genomes]
rs1483643	1.00[CHB][hapmap];0.91[ASN][1000 genomes]
rs1483644	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs1904997	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs192844	0.81[CHB][hapmap]
rs1994031	1.00[CHB][hapmap];0.91[ASN][1000 genomes]
rs2062038	0.87[CHB][hapmap]
rs2068238	0.81[CHB][hapmap]
rs2128000	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2170373	0.83[CHB][hapmap]
rs2251415	1.00[CHB][hapmap];0.91[ASN][1000 genomes]
rs2392627	0.86[CHB][hapmap]
rs2448941	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2467205	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2623208	0.90[ASN][1000 genomes]
rs2623210	0.88[ASN][1000 genomes]
rs2623211	0.90[ASN][1000 genomes]
rs2623216	0.90[ASN][1000 genomes]
rs2623225	1.00[CHB][hapmap];0.91[ASN][1000 genomes]
rs2625736	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2625739	0.81[CHB][hapmap]
rs2625752	0.90[ASN][1000 genomes]
rs2625755	0.90[ASN][1000 genomes]
rs2930096	0.91[ASN][1000 genomes]
rs310558	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs310574	0.89[JPT][hapmap]
rs3919897	0.81[CHB][hapmap]
rs4538902	0.81[CHB][hapmap]
rs4577970	0.81[CHB][hapmap]
rs4873149	0.81[CHB][hapmap]
rs4873457	0.86[CHB][hapmap]
rs4873459	1.00[CHB][hapmap];0.91[JPT][hapmap];0.93[ASN][1000 genomes]
rs6473124	0.81[CHB][hapmap]
rs6473144	0.81[CHB][hapmap]
rs6983589	0.87[CHB][hapmap]
rs6997739	0.82[CHB][hapmap]
rs7009024	0.86[CHB][hapmap];0.81[JPT][hapmap];0.82[ASN][1000 genomes]
rs7015139	0.93[CHB][hapmap]
rs7826421	0.81[CHB][hapmap]
rs7827319	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.96[YRI][hapmap]
rs7836540	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7842092	0.87[CHB][hapmap]
rs9298323	0.86[CHB][hapmap]
rs9643435	0.81[CHB][hapmap]
rs9650165	0.86[CHB][hapmap]
rs9650166	0.87[CHB][hapmap]
rs996523	0.81[CHB][hapmap]
rs996524	1.00[CHB][hapmap];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916392	chr8:50827638-51395140	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv948436	chr8:51115028-51917504	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv831312	chr8:51239772-51422844	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv916262	chr8:51322341-51437077	ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv429914	chr8:51371447-51617647	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links