Variant report

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10808836	0.81[ASN][1000 genomes]
rs10957910	0.84[AMR][1000 genomes]
rs10957914	0.90[CHB][hapmap]
rs10957927	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1114500	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs1114808	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs11781401	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs12543175	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12546744	0.80[CHB][hapmap];0.81[JPT][hapmap]
rs13258865	0.86[CHB][hapmap]
rs1383815	0.84[TSI][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1481467	0.84[TSI][hapmap];0.82[AMR][1000 genomes]
rs1481468	0.85[AMR][1000 genomes]
rs1481482	0.86[CHB][hapmap]
rs1483643	0.86[CHB][hapmap]
rs1483644	0.86[CHB][hapmap]
rs1904997	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs1994031	0.86[CHB][hapmap]
rs2128000	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs2251415	0.86[CHB][hapmap]
rs2448941	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs2467205	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs2623225	0.86[CHB][hapmap]
rs2625736	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs310558	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs4442158	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs4873459	0.86[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs6997739	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7827319	0.86[CHB][hapmap]
rs996524	0.86[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916392	chr8:50827638-51395140	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv948436	chr8:51115028-51917504	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv831312	chr8:51239772-51422844	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv916262	chr8:51322341-51437077	ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv520800	chr8:51365953-51371910	Weak transcription Bivalent Enhancer Enhancers Strong transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:51364800-51369800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr8:51365800-51375800	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr8:51366200-51369000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

Quick Search: