Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10957927	0.86[ASN][1000 genomes]
rs12546744	0.83[ASN][1000 genomes]
rs13280990	0.90[AFR][1000 genomes]
rs1481482	0.90[ASN][1000 genomes]
rs1483643	0.90[ASN][1000 genomes]
rs1483644	0.83[ASN][1000 genomes]
rs1994031	0.90[ASN][1000 genomes]
rs2251415	0.90[ASN][1000 genomes]
rs2467205	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2623208	0.89[ASN][1000 genomes]
rs2623210	0.86[ASN][1000 genomes]
rs2623211	0.89[ASN][1000 genomes]
rs2623216	0.89[ASN][1000 genomes]
rs2623225	0.90[ASN][1000 genomes]
rs2625752	0.89[ASN][1000 genomes]
rs2625755	0.89[ASN][1000 genomes]
rs2930096	0.90[ASN][1000 genomes]
rs4873459	0.92[ASN][1000 genomes]
rs7009024	0.81[ASN][1000 genomes]
rs7836540	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs996524	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916392	chr8:50827638-51395140	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv948436	chr8:51115028-51917504	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv831312	chr8:51239772-51422844	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv916262	chr8:51322341-51437077	ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv429914	chr8:51371447-51617647	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:51365800-51375800	Weak transcription	Cortex derived primary cultured neurospheres	brain

Quick Search: