Variant report

Variant	rs2467205
Chromosome Location	chr8:51426748-51426749
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs10090266	0.81[CHB][hapmap]
rs10101856	0.81[CHB][hapmap]
rs1017841	0.81[CHB][hapmap]
rs10808836	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10957914	1.00[CHB][hapmap]
rs10957915	0.86[CHB][hapmap]
rs10957916	0.86[CHB][hapmap]
rs10957927	0.85[ASN][1000 genomes]
rs1114500	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1114808	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11781401	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap]
rs11995834	0.81[CHB][hapmap]
rs12216754	0.81[CHB][hapmap]
rs12541766	0.81[CHB][hapmap]
rs12546734	0.84[AMR][1000 genomes]
rs12546744	0.94[CHB][hapmap];0.80[JPT][hapmap];0.82[ASN][1000 genomes]
rs12546758	0.81[CHB][hapmap]
rs13258865	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs13274680	0.81[CHB][hapmap]
rs1383815	0.82[CHB][hapmap]
rs1481467	0.82[CHB][hapmap]
rs1481468	0.83[CHB][hapmap]
rs1481469	0.81[CHB][hapmap]
rs1481475	0.81[CHB][hapmap]
rs1481476	0.81[CHB][hapmap]
rs1481477	0.81[CHB][hapmap]
rs1481482	1.00[CHB][hapmap];0.93[ASN][1000 genomes]
rs1483643	1.00[CHB][hapmap];0.93[ASN][1000 genomes]
rs1483644	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs1904997	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs192844	0.81[CHB][hapmap]
rs1994031	1.00[CHB][hapmap];0.93[ASN][1000 genomes]
rs2062038	0.87[CHB][hapmap]
rs2068238	0.81[CHB][hapmap]
rs2128000	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2170373	0.83[CHB][hapmap]
rs218876	0.81[AFR][1000 genomes]
rs2251415	1.00[CHB][hapmap];0.93[ASN][1000 genomes]
rs2392627	0.86[CHB][hapmap]
rs2448941	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2623208	0.92[ASN][1000 genomes]
rs2623210	0.90[ASN][1000 genomes]
rs2623211	0.92[ASN][1000 genomes]
rs2623216	0.92[ASN][1000 genomes]
rs2623225	1.00[CHB][hapmap];0.93[ASN][1000 genomes]
rs2625736	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2625739	0.81[CHB][hapmap]
rs2625752	0.92[ASN][1000 genomes]
rs2625755	0.92[ASN][1000 genomes]
rs2930096	0.93[ASN][1000 genomes]
rs310558	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs310574	0.89[JPT][hapmap]
rs3919897	0.81[CHB][hapmap]
rs4442158	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs4538902	0.81[CHB][hapmap]
rs4577970	0.81[CHB][hapmap]
rs4873149	0.81[CHB][hapmap]
rs4873457	0.86[CHB][hapmap]
rs4873459	1.00[CHB][hapmap];0.91[JPT][hapmap];0.91[ASN][1000 genomes]
rs6473124	0.81[CHB][hapmap]
rs6473144	0.81[CHB][hapmap]
rs6983589	0.87[CHB][hapmap]
rs6997739	0.82[CHB][hapmap]
rs7009024	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs7015139	0.93[CHB][hapmap]
rs7826421	0.81[CHB][hapmap]
rs7827319	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.96[YRI][hapmap]
rs7842092	0.87[CHB][hapmap]
rs9298323	0.86[CHB][hapmap]
rs9643435	0.81[CHB][hapmap]
rs9650165	0.86[CHB][hapmap]
rs9650166	0.87[CHB][hapmap]
rs996523	0.81[CHB][hapmap]
rs996524	1.00[CHB][hapmap];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948436	chr8:51115028-51917504	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv916262	chr8:51322341-51437077	ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv429914	chr8:51371447-51617647	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv531502	chr8:51390997-51703556	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	esv3365669	chr8:51416448-51446878	Enhancers ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases
6	esv3426268	chr8:51416448-51448918	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
7	esv3514165	chr8:51416583-51923545	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	esv3514166	chr8:51416583-51923545	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv1029576	chr8:51418003-51476385	ZNF genes & repeats Strong transcription Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:51426400-51427200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell

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