Variant report

Variant	rs10957914
Chromosome Location	chr8:51348531-51348532
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs10090266	0.81[CHB][hapmap]
rs10090468	0.83[EUR][1000 genomes]
rs10101856	0.81[CHB][hapmap]
rs1017841	0.81[CHB][hapmap]
rs10808829	1.00[CEU][hapmap];0.81[CHB][hapmap];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10957915	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs10957916	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs10957927	0.86[ASN][1000 genomes]
rs1114500	1.00[CHB][hapmap]
rs1114808	1.00[CHB][hapmap]
rs11781401	1.00[CHB][hapmap]
rs11995834	0.81[CHB][hapmap]
rs12216754	0.81[CHB][hapmap]
rs12541766	0.81[CHB][hapmap]
rs12546744	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12546758	0.81[CHB][hapmap]
rs13258865	1.00[CHB][hapmap]
rs13266691	0.81[EUR][1000 genomes]
rs13274680	0.81[CHB][hapmap]
rs1383815	1.00[CHB][hapmap];0.84[JPT][hapmap];0.99[ASN][1000 genomes]
rs1481467	1.00[CHB][hapmap];0.84[JPT][hapmap];0.99[ASN][1000 genomes]
rs1481468	1.00[CHB][hapmap];0.86[JPT][hapmap];0.98[ASN][1000 genomes]
rs1481469	0.81[CHB][hapmap]
rs1481475	0.81[CHB][hapmap]
rs1481476	0.81[CHB][hapmap]
rs1481477	0.81[CHB][hapmap]
rs1481480	0.83[CHB][hapmap]
rs1481482	1.00[CHB][hapmap]
rs1483643	1.00[CHB][hapmap]
rs1483644	1.00[CHB][hapmap]
rs1904997	1.00[CHB][hapmap]
rs192844	0.81[CHB][hapmap]
rs1994031	1.00[CHB][hapmap]
rs2062038	1.00[CEU][hapmap];0.81[CHB][hapmap];0.83[EUR][1000 genomes]
rs2068238	0.81[CHB][hapmap]
rs2128000	1.00[CHB][hapmap]
rs2170373	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2251415	1.00[CHB][hapmap]
rs2392627	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs2448941	1.00[CHB][hapmap]
rs2467205	1.00[CHB][hapmap]
rs2623225	1.00[CHB][hapmap]
rs2625736	1.00[CHB][hapmap]
rs2625739	0.81[CHB][hapmap]
rs310558	1.00[CHB][hapmap]
rs3919897	0.81[CHB][hapmap]
rs4442158	1.00[CHB][hapmap]
rs4538902	0.81[CHB][hapmap]
rs4577970	0.81[CHB][hapmap]
rs4873149	0.81[CHB][hapmap]
rs4873457	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs4873459	1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6473124	0.81[CHB][hapmap]
rs6473144	0.81[CHB][hapmap]
rs6473238	0.82[CHB][hapmap]
rs6983589	1.00[CEU][hapmap];0.81[CHB][hapmap];0.81[EUR][1000 genomes]
rs6997739	1.00[CHB][hapmap];0.95[ASN][1000 genomes]
rs7009024	0.90[CHB][hapmap]
rs7015139	1.00[CEU][hapmap];0.89[CHB][hapmap];0.83[EUR][1000 genomes]
rs7826421	0.81[CHB][hapmap]
rs7827319	1.00[CHB][hapmap]
rs7839067	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs7842092	0.86[CEU][hapmap];0.81[CHB][hapmap]
rs922724	0.83[CHB][hapmap]
rs9298323	0.85[CEU][hapmap]
rs9643435	0.81[CHB][hapmap]
rs9650165	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs9650166	1.00[CEU][hapmap];0.81[CHB][hapmap];0.83[EUR][1000 genomes]
rs996523	0.81[CHB][hapmap]
rs996524	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916392	chr8:50827638-51395140	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv948436	chr8:51115028-51917504	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv831312	chr8:51239772-51422844	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv916262	chr8:51322341-51437077	ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:51347800-51349200	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr8:51347800-51349200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr8:51348200-51349600	Enhancers	Brain Germinal Matrix	brain
4	chr8:51348400-51348600	Flanking Active TSS	Liver	Liver
5	chr8:51348400-51348800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr8:51348400-51356200	Weak transcription	Fetal Intestine Small	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links