Variant report

Variant	rs10808829
Chromosome Location	chr8:51338761-51338762
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10090266	0.81[CHB][hapmap]
rs10090468	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10101856	0.81[CHB][hapmap]
rs1017841	0.81[CHB][hapmap]
rs10957914	1.00[CEU][hapmap];0.81[CHB][hapmap];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10957915	1.00[CEU][hapmap];0.86[CHB][hapmap];0.88[JPT][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10957916	1.00[CEU][hapmap];0.86[CHB][hapmap];0.88[JPT][hapmap];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11783146	0.89[ASN][1000 genomes]
rs11995834	0.81[CHB][hapmap]
rs12216754	0.81[CHB][hapmap]
rs12541766	0.81[CHB][hapmap]
rs12546744	0.92[CEU][hapmap];0.81[EUR][1000 genomes]
rs12546758	0.81[CHB][hapmap]
rs13266691	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13274680	0.81[CHB][hapmap]
rs1383815	0.82[CHB][hapmap];0.81[ASN][1000 genomes]
rs1383820	0.83[ASN][1000 genomes]
rs1471577	0.83[ASN][1000 genomes]
rs1471578	0.83[ASN][1000 genomes]
rs1481467	0.82[CHB][hapmap];0.81[ASN][1000 genomes]
rs1481468	0.83[CHB][hapmap];0.81[JPT][hapmap];0.80[ASN][1000 genomes]
rs1481469	0.81[CHB][hapmap]
rs1481475	0.81[CHB][hapmap];0.81[ASN][1000 genomes]
rs1481476	0.81[CHB][hapmap]
rs1481477	0.81[CHB][hapmap]
rs192844	0.81[CHB][hapmap]
rs2062038	1.00[CEU][hapmap];0.87[CHB][hapmap];0.89[JPT][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2068238	0.81[CHB][hapmap]
rs2170373	0.92[CEU][hapmap];0.83[CHB][hapmap];0.81[JPT][hapmap];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2392627	1.00[CEU][hapmap];0.86[CHB][hapmap];0.88[JPT][hapmap];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2625739	0.81[CHB][hapmap]
rs3919897	0.81[CHB][hapmap]
rs4538902	0.81[CHB][hapmap]
rs4577970	0.81[CHB][hapmap]
rs4873147	0.83[ASN][1000 genomes]
rs4873149	0.81[CHB][hapmap]
rs4873457	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4873458	0.83[ASN][1000 genomes]
rs6473124	0.81[CHB][hapmap]
rs6473144	0.81[CHB][hapmap];0.81[ASN][1000 genomes]
rs6983589	1.00[CEU][hapmap];0.87[CHB][hapmap];0.89[JPT][hapmap];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6997739	0.82[CHB][hapmap]
rs7015139	1.00[CEU][hapmap];0.86[CHB][hapmap];0.89[JPT][hapmap];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7817955	0.81[ASN][1000 genomes]
rs7826421	0.81[CHB][hapmap]
rs7839067	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7842092	0.87[CHB][hapmap];0.89[JPT][hapmap];0.89[ASN][1000 genomes]
rs9298323	0.86[CHB][hapmap];0.89[ASN][1000 genomes]
rs9643435	0.81[CHB][hapmap]
rs9650165	1.00[CEU][hapmap];0.86[CHB][hapmap];0.88[JPT][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9650166	1.00[CEU][hapmap];0.87[CHB][hapmap];0.89[JPT][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs996523	0.81[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916392	chr8:50827638-51395140	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv948436	chr8:51115028-51917504	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv831312	chr8:51239772-51422844	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv916262	chr8:51322341-51437077	ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:51320600-51343200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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