Variant report

Variant	rs10101856
Chromosome Location	chr8:51318085-51318086
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 99 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:96)

rs_ID	r²[population]
rs10090266	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10090468	0.87[ASN][1000 genomes]
rs1017841	0.85[CHB][hapmap]
rs10504101	0.88[JPT][hapmap]
rs10808829	0.81[CHB][hapmap]
rs10957899	0.89[JPT][hapmap];0.97[AMR][1000 genomes]
rs10957909	0.92[ASN][1000 genomes]
rs10957914	0.81[CHB][hapmap]
rs10957915	0.92[CHB][hapmap];0.87[ASN][1000 genomes]
rs10957916	0.92[CHB][hapmap];0.87[ASN][1000 genomes]
rs1114500	0.81[CHB][hapmap]
rs11783146	0.87[ASN][1000 genomes]
rs11995834	0.85[CHB][hapmap]
rs12216754	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs12541766	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs12546758	0.85[CHB][hapmap]
rs13258865	0.81[CHB][hapmap]
rs13266691	0.87[ASN][1000 genomes]
rs13274680	0.85[CHB][hapmap]
rs1383818	0.84[CHB][hapmap]
rs1383820	0.81[ASN][1000 genomes]
rs1450123	0.88[JPT][hapmap]
rs1471577	0.81[ASN][1000 genomes]
rs1471578	0.84[CHB][hapmap];0.81[ASN][1000 genomes]
rs1481469	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs1481472	0.84[CHB][hapmap]
rs1481475	0.85[CHB][hapmap]
rs1481476	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs1481477	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs1483644	0.81[CHB][hapmap]
rs1542615	0.84[CHB][hapmap]
rs16914623	0.89[JPT][hapmap]
rs16914702	0.89[JPT][hapmap]
rs16914726	0.88[JPT][hapmap]
rs16914778	0.89[JPT][hapmap]
rs16914815	0.86[AMR][1000 genomes]
rs16914864	0.86[AMR][1000 genomes]
rs192844	0.85[CHB][hapmap]
rs1971259	0.84[CHB][hapmap]
rs2062038	0.93[CHB][hapmap];0.87[ASN][1000 genomes]
rs2068238	0.85[CHB][hapmap]
rs2128000	0.81[CHB][hapmap]
rs2169183	0.88[JPT][hapmap]
rs2251415	0.81[CHB][hapmap]
rs2392627	0.92[CHB][hapmap];0.87[ASN][1000 genomes]
rs2392699	0.84[CHB][hapmap]
rs2467205	0.81[CHB][hapmap]
rs2623207	0.84[CHB][hapmap]
rs2623224	0.84[CHB][hapmap]
rs2625736	0.81[CHB][hapmap]
rs2625739	0.85[CHB][hapmap]
rs310558	0.81[CHB][hapmap]
rs310574	0.84[CHB][hapmap]
rs3919897	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4242461	0.88[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4349993	0.89[JPT][hapmap];0.85[AMR][1000 genomes]
rs4367560	0.89[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4367564	0.88[JPT][hapmap];0.88[AMR][1000 genomes]
rs4376507	0.89[JPT][hapmap];0.85[AMR][1000 genomes]
rs4416833	0.89[JPT][hapmap]
rs4440649	0.84[CHB][hapmap]
rs4442158	0.81[CHB][hapmap]
rs4449807	0.89[JPT][hapmap];0.85[AMR][1000 genomes]
rs4523268	0.88[JPT][hapmap];0.85[AMR][1000 genomes]
rs4524809	0.88[JPT][hapmap];0.92[YRI][hapmap];1.00[AMR][1000 genomes]
rs4538902	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs4570174	0.89[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4577970	0.85[CHB][hapmap]
rs4607635	0.89[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4873147	0.84[CHB][hapmap];0.81[ASN][1000 genomes]
rs4873149	0.85[CHB][hapmap]
rs4873445	0.89[JPT][hapmap]
rs4873450	0.88[JPT][hapmap]
rs4873455	0.88[JPT][hapmap];0.97[AMR][1000 genomes]
rs4873457	0.92[CHB][hapmap];0.87[ASN][1000 genomes]
rs4873458	0.84[CHB][hapmap];0.81[ASN][1000 genomes]
rs4873459	0.81[CHB][hapmap]
rs56370038	0.90[AMR][1000 genomes]
rs6473124	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs6473144	0.85[CHB][hapmap]
rs6983589	0.93[CHB][hapmap];0.87[ASN][1000 genomes]
rs6984454	0.88[JPT][hapmap];0.85[AMR][1000 genomes]
rs7015139	0.92[CHB][hapmap];0.87[ASN][1000 genomes]
rs7817955	0.84[CHB][hapmap]
rs7823310	0.89[JPT][hapmap];0.86[AMR][1000 genomes]
rs7826421	0.85[CHB][hapmap]
rs7827319	0.81[CHB][hapmap]
rs7835915	0.85[AMR][1000 genomes]
rs7842092	0.93[CHB][hapmap];0.87[ASN][1000 genomes]
rs9298318	1.00[JPT][hapmap];0.85[AMR][1000 genomes]
rs9298323	0.92[CHB][hapmap];0.87[ASN][1000 genomes]
rs9643435	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9650165	0.92[CHB][hapmap];0.87[ASN][1000 genomes]
rs9650166	0.93[CHB][hapmap];0.87[ASN][1000 genomes]
rs996523	0.85[CHB][hapmap]
rs996524	0.81[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916392	chr8:50827638-51395140	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv948436	chr8:51115028-51917504	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv831312	chr8:51239772-51422844	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:51300000-51319800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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