Variant report

Variant	rs16914623
Chromosome Location	chr8:51200319-51200320
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10086021	0.97[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10090266	0.89[JPT][hapmap]
rs10101856	0.89[JPT][hapmap]
rs10103929	0.90[CHB][hapmap];0.89[JPT][hapmap];0.97[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10107397	0.90[CHB][hapmap];0.88[JPT][hapmap]
rs10282933	0.81[CHB][hapmap];0.88[JPT][hapmap];0.90[YRI][hapmap]
rs10504101	0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10957899	1.00[JPT][hapmap]
rs11993995	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11998724	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12216754	0.89[JPT][hapmap]
rs12541766	0.89[JPT][hapmap]
rs1450123	1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1481469	0.89[JPT][hapmap]
rs1481476	0.89[JPT][hapmap]
rs1481477	0.89[JPT][hapmap]
rs16914661	0.90[CHB][hapmap];0.89[JPT][hapmap];0.97[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs16914702	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16914726	1.00[JPT][hapmap];0.82[YRI][hapmap];0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs16914778	1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2044775	0.86[ASN][1000 genomes]
rs2169183	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs28496647	0.94[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs28513173	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs28869785	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs28886897	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs28895348	0.97[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs3919897	0.89[JPT][hapmap]
rs4242461	1.00[JPT][hapmap]
rs4349993	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs4367560	1.00[JPT][hapmap]
rs4367564	1.00[JPT][hapmap]
rs4376507	1.00[JPT][hapmap]
rs4416833	1.00[JPT][hapmap]
rs4449807	1.00[JPT][hapmap]
rs4523268	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs4524809	1.00[JPT][hapmap]
rs4538902	0.89[JPT][hapmap]
rs4570174	1.00[JPT][hapmap]
rs4607635	1.00[JPT][hapmap]
rs4873441	0.81[CHB][hapmap];0.89[JPT][hapmap];0.90[YRI][hapmap]
rs4873445	0.89[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap]
rs4873450	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4873455	1.00[JPT][hapmap]
rs56370038	0.83[ASN][1000 genomes]
rs57368926	0.97[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs57879337	0.97[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs59878004	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs6473124	0.89[JPT][hapmap]
rs6984454	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs73676273	0.84[AMR][1000 genomes]
rs73678730	0.97[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs73678735	0.97[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs73678750	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7823310	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs921330	0.90[CHB][hapmap];0.89[JPT][hapmap];0.82[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs9298318	1.00[JPT][hapmap]
rs9643435	0.89[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916392	chr8:50827638-51395140	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv948436	chr8:51115028-51917504	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv470212	chr8:51176635-51227506	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:51198600-51200600	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr8:51198800-51200400	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr8:51199200-51200800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr8:51199400-51200400	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr8:51199600-51200400	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr8:51200000-51200400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr8:51200000-51200800	Enhancers	Adipose Nuclei	Adipose
8	chr8:51200200-51202600	Weak transcription	H9 Cell Line	embryonic stem cell

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