Variant report

Variant	rs73676273
Chromosome Location	chr8:51123939-51123940
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10086021	0.81[AMR][1000 genomes]
rs10103929	0.81[AMR][1000 genomes]
rs10504101	0.84[AMR][1000 genomes]
rs16914318	0.84[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs16914321	0.84[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs16914423	0.93[ASN][1000 genomes]
rs16914623	0.84[AMR][1000 genomes]
rs16914661	0.81[AMR][1000 genomes]
rs16914702	0.84[AMR][1000 genomes]
rs1993680	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs28869785	0.81[AMR][1000 genomes]
rs28886897	0.84[AMR][1000 genomes]
rs28895348	0.81[AMR][1000 genomes]
rs4873450	0.84[AMR][1000 genomes]
rs57368926	0.81[AMR][1000 genomes]
rs57879337	0.81[AMR][1000 genomes]
rs58489421	0.80[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs58958741	0.87[ASN][1000 genomes]
rs59878004	0.81[AMR][1000 genomes]
rs73676252	0.93[ASN][1000 genomes]
rs73678730	0.81[AMR][1000 genomes]
rs73678735	0.81[AMR][1000 genomes]
rs921330	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3353749	chr8:50530807-51139242	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv916392	chr8:50827638-51395140	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv2759613	chr8:50873293-51137995	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv2758621	chr8:50886593-51137995	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv948436	chr8:51115028-51917504	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv8341	chr8:51123911-51130847	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:51122200-51124800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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