Variant report
| Variant | rs59878004 |
|---|---|
| Chromosome Location | chr8:51158974-51158975 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs10086021 | 0.87[AMR][1000 genomes] |
| rs10103929 | 0.87[AMR][1000 genomes] |
| rs10504101 | 0.87[AFR][1000 genomes];0.90[AMR][1000 genomes] |
| rs11993995 | 0.90[AMR][1000 genomes] |
| rs11998724 | 0.87[AMR][1000 genomes] |
| rs1450123 | 0.84[AMR][1000 genomes] |
| rs16914623 | 0.87[AFR][1000 genomes];0.90[AMR][1000 genomes] |
| rs16914661 | 0.87[AMR][1000 genomes] |
| rs16914702 | 0.87[AFR][1000 genomes];0.90[AMR][1000 genomes] |
| rs16914726 | 0.84[AMR][1000 genomes] |
| rs16914778 | 0.90[AMR][1000 genomes] |
| rs28496647 | 0.84[AMR][1000 genomes] |
| rs28513173 | 0.84[AMR][1000 genomes] |
| rs28869785 | 0.83[AFR][1000 genomes];0.87[AMR][1000 genomes] |
| rs28886897 | 0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs28895348 | 0.87[AMR][1000 genomes] |
| rs4873450 | 0.87[AFR][1000 genomes];0.90[AMR][1000 genomes] |
| rs57368926 | 0.87[AMR][1000 genomes] |
| rs57879337 | 0.87[AMR][1000 genomes] |
| rs73676273 | 0.81[AMR][1000 genomes] |
| rs73678730 | 0.87[AMR][1000 genomes] |
| rs73678735 | 0.87[AMR][1000 genomes] |
| rs73678750 | 0.83[AFR][1000 genomes];0.84[AMR][1000 genomes] |
| rs921330 | 0.81[AFR][1000 genomes];0.90[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv916392 | chr8:50827638-51395140 | Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv948436 | chr8:51115028-51917504 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:51156800-51161400 | Weak transcription | Ganglion Eminence derived primary cultured neurospheres | brain |
