Variant report

Variant	rs28496647
Chromosome Location	chr8:51217570-51217571
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10086021	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10103929	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10504101	0.94[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11993995	0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs11998724	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1450123	0.87[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs16914623	0.94[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs16914661	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16914702	0.94[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs16914726	0.87[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs16914778	0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs2044775	0.91[ASN][1000 genomes]
rs28513173	0.87[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs28869785	0.90[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs28886897	0.94[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs28895348	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4873450	0.94[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs57368926	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57879337	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs59878004	0.84[AMR][1000 genomes]
rs73678730	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73678735	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73678750	0.87[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs921330	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916392	chr8:50827638-51395140	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv948436	chr8:51115028-51917504	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv470212	chr8:51176635-51227506	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv6185	chr8:51213648-51237196	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3480460	chr8:51217513-51219215	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3480461	chr8:51217513-51219215	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:51209400-51220600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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