Variant report

Variant	rs2044775
Chromosome Location	chr8:51223197-51223198
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 108 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:104)

rs_ID	r²[population]
rs10086021	0.91[ASN][1000 genomes]
rs10086203	0.95[EUR][1000 genomes]
rs10087774	0.95[EUR][1000 genomes]
rs10087960	0.95[EUR][1000 genomes]
rs10093114	0.95[EUR][1000 genomes]
rs10095465	0.95[EUR][1000 genomes]
rs10095599	0.95[EUR][1000 genomes]
rs10095759	0.95[EUR][1000 genomes]
rs10095977	0.95[EUR][1000 genomes]
rs10102970	0.95[EUR][1000 genomes]
rs10103929	0.90[ASN][1000 genomes]
rs10282858	0.95[EUR][1000 genomes]
rs10283045	0.95[EUR][1000 genomes]
rs10283105	0.95[EUR][1000 genomes]
rs10283106	0.95[EUR][1000 genomes]
rs10283221	0.95[EUR][1000 genomes]
rs10504101	0.81[ASN][1000 genomes]
rs10504102	1.00[EUR][1000 genomes]
rs10504104	0.95[EUR][1000 genomes]
rs10504105	0.95[EUR][1000 genomes]
rs11984700	0.91[EUR][1000 genomes]
rs11984985	0.95[EUR][1000 genomes]
rs11985591	0.95[EUR][1000 genomes]
rs11985777	1.00[EUR][1000 genomes]
rs11987370	0.88[EUR][1000 genomes]
rs11988564	0.95[EUR][1000 genomes]
rs11988748	0.95[EUR][1000 genomes]
rs11989092	1.00[EUR][1000 genomes]
rs11989138	0.91[EUR][1000 genomes]
rs11989227	0.95[EUR][1000 genomes]
rs11989642	0.95[EUR][1000 genomes]
rs11991913	0.95[EUR][1000 genomes]
rs11993064	0.95[EUR][1000 genomes]
rs11994575	1.00[EUR][1000 genomes]
rs11996185	0.95[EUR][1000 genomes]
rs11996262	0.95[EUR][1000 genomes]
rs11997543	0.95[EUR][1000 genomes]
rs11997557	0.95[EUR][1000 genomes]
rs11997687	1.00[EUR][1000 genomes]
rs11998275	0.95[EUR][1000 genomes]
rs11998338	1.00[EUR][1000 genomes]
rs16914623	0.86[ASN][1000 genomes]
rs16914626	0.91[EUR][1000 genomes]
rs16914631	0.91[EUR][1000 genomes]
rs16914632	0.91[EUR][1000 genomes]
rs16914638	0.91[EUR][1000 genomes]
rs16914639	0.91[EUR][1000 genomes]
rs16914661	0.91[ASN][1000 genomes]
rs16914689	0.95[EUR][1000 genomes]
rs16914697	1.00[EUR][1000 genomes]
rs16914702	0.86[ASN][1000 genomes]
rs16914723	0.95[EUR][1000 genomes]
rs16914738	0.95[EUR][1000 genomes]
rs16914745	0.95[EUR][1000 genomes]
rs16914775	0.95[EUR][1000 genomes]
rs17697781	1.00[EUR][1000 genomes]
rs17698658	0.95[EUR][1000 genomes]
rs17699001	0.95[EUR][1000 genomes]
rs17699210	0.95[EUR][1000 genomes]
rs17699383	0.95[EUR][1000 genomes]
rs17772011	0.95[EUR][1000 genomes]
rs17772076	0.95[EUR][1000 genomes]
rs17778411	0.95[EUR][1000 genomes]
rs28378585	0.95[EUR][1000 genomes]
rs28417739	0.95[EUR][1000 genomes]
rs28446113	0.95[EUR][1000 genomes]
rs28480358	0.91[EUR][1000 genomes]
rs28496647	0.91[ASN][1000 genomes]
rs28546889	0.95[EUR][1000 genomes]
rs28597814	0.95[EUR][1000 genomes]
rs28616251	0.95[EUR][1000 genomes]
rs28640202	0.95[EUR][1000 genomes]
rs28681508	0.95[EUR][1000 genomes]
rs28691575	0.95[EUR][1000 genomes]
rs28736414	0.95[EUR][1000 genomes]
rs28813492	0.95[EUR][1000 genomes]
rs28838001	0.95[EUR][1000 genomes]
rs28845183	0.95[EUR][1000 genomes]
rs28886897	0.83[ASN][1000 genomes]
rs28895348	0.91[ASN][1000 genomes]
rs34733089	1.00[EUR][1000 genomes]
rs4873450	0.86[ASN][1000 genomes]
rs57368926	0.91[ASN][1000 genomes]
rs57869622	0.91[EUR][1000 genomes]
rs57879337	0.88[ASN][1000 genomes]
rs58720841	0.95[EUR][1000 genomes]
rs59508370	0.95[EUR][1000 genomes]
rs60950210	0.91[EUR][1000 genomes]
rs61048132	0.91[EUR][1000 genomes]
rs61158477	0.95[EUR][1000 genomes]
rs61620844	0.95[EUR][1000 genomes]
rs6473055	0.88[EUR][1000 genomes]
rs7015595	0.95[EUR][1000 genomes]
rs7357386	0.90[EUR][1000 genomes]
rs7357569	0.95[EUR][1000 genomes]
rs73678730	0.91[ASN][1000 genomes]
rs73678735	0.91[ASN][1000 genomes]
rs7813238	1.00[EUR][1000 genomes]
rs7817761	1.00[EUR][1000 genomes]
rs7821353	0.95[EUR][1000 genomes]
rs7830244	1.00[EUR][1000 genomes]
rs7845924	0.91[EUR][1000 genomes]
rs7846071	0.91[EUR][1000 genomes]
rs921330	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916392	chr8:50827638-51395140	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv948436	chr8:51115028-51917504	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv470212	chr8:51176635-51227506	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv6185	chr8:51213648-51237196	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:51221000-51223400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr8:51221000-51223600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr8:51221200-51223400	Weak transcription	Cortex derived primary cultured neurospheres	brain

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