Variant report

Variant	rs57869622
Chromosome Location	chr8:51199603-51199604
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 93 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:90)

rs_ID	r²[population]
rs10086203	0.86[EUR][1000 genomes]
rs10087774	0.86[EUR][1000 genomes]
rs10087960	0.86[EUR][1000 genomes]
rs10093114	0.86[EUR][1000 genomes]
rs10095465	0.86[EUR][1000 genomes]
rs10095599	0.86[EUR][1000 genomes]
rs10095759	0.86[EUR][1000 genomes]
rs10095977	0.86[EUR][1000 genomes]
rs10102970	0.86[EUR][1000 genomes]
rs10282858	0.86[EUR][1000 genomes]
rs10283045	0.86[EUR][1000 genomes]
rs10283105	0.86[EUR][1000 genomes]
rs10283106	0.86[EUR][1000 genomes]
rs10283221	0.86[EUR][1000 genomes]
rs10504102	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10504104	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10504105	0.86[EUR][1000 genomes]
rs11984700	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11984985	0.86[EUR][1000 genomes]
rs11985591	0.86[EUR][1000 genomes]
rs11985777	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11987370	1.00[AFR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11988394	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11988564	0.86[EUR][1000 genomes]
rs11988748	0.86[EUR][1000 genomes]
rs11989092	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11989138	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11989227	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11989642	0.86[EUR][1000 genomes]
rs11991913	0.86[EUR][1000 genomes]
rs11993064	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11994575	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11996185	0.86[EUR][1000 genomes]
rs11996262	0.86[EUR][1000 genomes]
rs11997543	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11997557	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11997687	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11998275	0.86[EUR][1000 genomes]
rs11998338	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16914626	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16914631	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16914632	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16914638	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16914639	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16914689	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16914697	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16914723	0.86[EUR][1000 genomes]
rs16914738	0.86[EUR][1000 genomes]
rs16914745	0.86[EUR][1000 genomes]
rs16914775	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17697781	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17698658	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17699001	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17699210	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17699383	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17772011	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17772076	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17778411	0.86[EUR][1000 genomes]
rs2044775	0.91[EUR][1000 genomes]
rs28378585	0.86[EUR][1000 genomes]
rs28417739	0.86[EUR][1000 genomes]
rs28446113	0.86[EUR][1000 genomes]
rs28480358	0.82[EUR][1000 genomes]
rs28546889	0.86[EUR][1000 genomes]
rs28597814	0.86[EUR][1000 genomes]
rs28616251	0.86[EUR][1000 genomes]
rs28640202	0.86[EUR][1000 genomes]
rs28681508	0.86[EUR][1000 genomes]
rs28691575	0.86[EUR][1000 genomes]
rs28736414	0.86[EUR][1000 genomes]
rs28813492	0.86[EUR][1000 genomes]
rs28838001	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28845183	0.86[EUR][1000 genomes]
rs34733089	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58720841	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs59508370	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs60950210	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61048132	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61158477	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61620844	0.86[EUR][1000 genomes]
rs6473055	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7015595	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7357386	0.81[EUR][1000 genomes]
rs7357569	0.86[EUR][1000 genomes]
rs7813238	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7817761	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7821353	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7830244	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7845924	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7846071	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916392	chr8:50827638-51395140	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv948436	chr8:51115028-51917504	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv470212	chr8:51176635-51227506	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:51198600-51200600	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr8:51198800-51200000	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr8:51198800-51200200	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr8:51198800-51200400	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr8:51199200-51200000	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr8:51199200-51200800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr8:51199400-51199800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr8:51199400-51200400	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr8:51199600-51200400	Enhancers	iPS-15b Cell Line	embryonic stem cell

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