Variant report

Variant	rs11988394
Chromosome Location	chr8:51199759-51199760
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10504102	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs11984700	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11985777	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs11987370	0.80[AFR][1000 genomes]
rs11989092	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs11989138	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11989227	0.81[AMR][1000 genomes]
rs11993064	0.81[AMR][1000 genomes]
rs11994575	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs11997543	0.81[AMR][1000 genomes]
rs11997557	0.81[AMR][1000 genomes]
rs11997687	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs11998338	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs16914626	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs16914631	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs16914632	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs16914638	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs16914639	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs16914689	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs16914697	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs16914775	0.81[AMR][1000 genomes]
rs17697781	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs34733089	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs57869622	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs58720841	0.81[AMR][1000 genomes]
rs59508370	0.81[AMR][1000 genomes]
rs60950210	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61048132	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61158477	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs6473055	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs7015595	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs7817761	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs7821353	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs7845924	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7846071	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916392	chr8:50827638-51395140	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv948436	chr8:51115028-51917504	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv470212	chr8:51176635-51227506	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:51198600-51200600	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr8:51198800-51200000	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr8:51198800-51200200	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr8:51198800-51200400	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr8:51199200-51200000	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr8:51199200-51200800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr8:51199400-51199800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr8:51199400-51200400	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr8:51199600-51200400	Enhancers	iPS-15b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links