Variant report

Variant	rs6473055
Chromosome Location	chr8:51206540-51206541
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 99 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:96)

rs_ID	r²[population]
rs10086203	0.84[EUR][1000 genomes]
rs10087774	0.84[EUR][1000 genomes]
rs10087960	1.00[CHD][hapmap];1.00[MEX][hapmap];0.84[EUR][1000 genomes]
rs10093114	0.84[EUR][1000 genomes]
rs10095465	0.84[EUR][1000 genomes]
rs10095599	1.00[CHD][hapmap];1.00[MEX][hapmap];0.84[EUR][1000 genomes]
rs10095759	0.84[EUR][1000 genomes]
rs10095977	0.84[EUR][1000 genomes]
rs10102970	0.84[EUR][1000 genomes]
rs10282858	0.84[EUR][1000 genomes]
rs10283045	0.84[EUR][1000 genomes]
rs10283105	0.84[EUR][1000 genomes]
rs10283106	0.84[EUR][1000 genomes]
rs10283221	0.84[EUR][1000 genomes]
rs10504102	1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10504104	1.00[CHD][hapmap];1.00[MEX][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10504105	0.84[EUR][1000 genomes]
rs11984700	1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11984985	0.84[EUR][1000 genomes]
rs11985591	0.84[EUR][1000 genomes]
rs11985777	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11987370	1.00[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11988394	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs11988564	0.84[EUR][1000 genomes]
rs11988748	0.84[EUR][1000 genomes]
rs11989092	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11989138	1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11989227	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11989642	0.84[EUR][1000 genomes]
rs11991913	0.84[EUR][1000 genomes]
rs11993064	1.00[MEX][hapmap];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11994575	1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11996185	0.84[EUR][1000 genomes]
rs11996262	0.84[EUR][1000 genomes]
rs11997543	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11997557	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11997687	1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11998275	0.84[EUR][1000 genomes]
rs11998338	1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16914626	1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16914631	1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16914632	1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16914638	1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16914639	1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16914645	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs16914653	1.00[ASW][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs16914689	1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16914697	1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16914704	1.00[JPT][hapmap]
rs16914706	1.00[JPT][hapmap]
rs16914723	0.84[EUR][1000 genomes]
rs16914738	1.00[CHD][hapmap];0.84[EUR][1000 genomes]
rs16914745	0.84[EUR][1000 genomes]
rs16914775	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17697265	1.00[ASW][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs17697781	1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17698658	1.00[MEX][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17699001	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17699210	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17699383	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17772011	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17772076	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17778411	0.84[EUR][1000 genomes]
rs2044775	0.88[EUR][1000 genomes]
rs28378585	0.84[EUR][1000 genomes]
rs28417739	1.00[CHD][hapmap];1.00[MEX][hapmap];0.84[EUR][1000 genomes]
rs28446113	0.84[EUR][1000 genomes]
rs28546889	0.84[EUR][1000 genomes]
rs28597814	0.84[EUR][1000 genomes]
rs28616251	0.84[EUR][1000 genomes]
rs28640202	0.84[EUR][1000 genomes]
rs28681508	0.84[EUR][1000 genomes]
rs28691575	0.84[EUR][1000 genomes]
rs28736414	0.84[EUR][1000 genomes]
rs28813492	0.84[EUR][1000 genomes]
rs28838001	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28845183	0.84[EUR][1000 genomes]
rs34733089	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57869622	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58720841	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs59508370	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs60950210	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61048132	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61158477	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61620844	0.84[EUR][1000 genomes]
rs6991040	1.00[JPT][hapmap]
rs6992813	1.00[ASW][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs7015595	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7357569	0.84[EUR][1000 genomes]
rs7813238	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7817761	1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7821353	1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7830244	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7845924	1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7846071	1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9918848	1.00[CHD][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916392	chr8:50827638-51395140	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv948436	chr8:51115028-51917504	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv470212	chr8:51176635-51227506	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:51206200-51206600	Enhancers	Fetal Intestine Large	intestine
2	chr8:51206200-51207600	Enhancers	Fetal Intestine Small	intestine

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