Variant report
| Variant | rs6991040 |
|---|---|
| Chromosome Location | chr8:51180633-51180634 |
| allele | C/G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:41)
| rs_ID | r2[population] |
|---|---|
| rs10504102 | 1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs11984700 | 1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs11985777 | 1.00[ASN][1000 genomes] |
| rs11987370 | 1.00[ASN][1000 genomes] |
| rs11989092 | 1.00[ASN][1000 genomes] |
| rs11989138 | 1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs11994575 | 1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs11997687 | 1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs11998338 | 1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs16914626 | 1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs16914631 | 1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs16914632 | 1.00[JPT][hapmap];0.90[ASN][1000 genomes] |
| rs16914638 | 1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs16914639 | 1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs16914645 | 1.00[JPT][hapmap] |
| rs16914653 | 1.00[JPT][hapmap] |
| rs16914689 | 1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs16914697 | 1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs16914704 | 1.00[JPT][hapmap] |
| rs16914706 | 1.00[JPT][hapmap] |
| rs17697265 | 1.00[JPT][hapmap] |
| rs17697781 | 1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs28838001 | 0.90[ASN][1000 genomes] |
| rs34733089 | 1.00[ASN][1000 genomes] |
| rs57869622 | 1.00[ASN][1000 genomes] |
| rs60950210 | 1.00[ASN][1000 genomes] |
| rs61048132 | 1.00[ASN][1000 genomes] |
| rs61158477 | 1.00[ASN][1000 genomes] |
| rs6473055 | 1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs6992813 | 1.00[JPT][hapmap] |
| rs7015595 | 1.00[ASN][1000 genomes] |
| rs7813238 | 1.00[ASN][1000 genomes] |
| rs7817166 | 0.82[AFR][1000 genomes] |
| rs7817761 | 1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs7820924 | 1.00[ASW][hapmap] |
| rs7821115 | 1.00[ASW][hapmap];1.00[LWK][hapmap] |
| rs7821353 | 1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs7830244 | 1.00[ASN][1000 genomes] |
| rs7845924 | 1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs7846071 | 1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs9918848 | 1.00[GIH][hapmap];1.00[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv916392 | chr8:50827638-51395140 | Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv948436 | chr8:51115028-51917504 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 3 | nsv524203 | chr8:51161232-51188675 | Active TSS Enhancers ZNF genes & repeats Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 4 | nsv470212 | chr8:51176635-51227506 | Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
