Variant report
Variant | rs28869785 |
---|---|
Chromosome Location | chr8:51242053-51242054 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10086021 | 0.93[AMR][1000 genomes];0.80[ASN][1000 genomes] |
rs10103929 | 0.93[AMR][1000 genomes] |
rs10504101 | 0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.82[ASN][1000 genomes] |
rs10957899 | 0.90[ASN][1000 genomes] |
rs11993995 | 0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs11998724 | 0.86[AMR][1000 genomes];0.98[ASN][1000 genomes] |
rs1450123 | 0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs16914623 | 0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[ASN][1000 genomes] |
rs16914661 | 0.93[AMR][1000 genomes];0.80[ASN][1000 genomes] |
rs16914702 | 0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[ASN][1000 genomes] |
rs16914726 | 0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs16914760 | 0.81[ASN][1000 genomes] |
rs16914778 | 0.90[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs28496647 | 0.90[AMR][1000 genomes];0.80[ASN][1000 genomes] |
rs28513173 | 0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs28886897 | 0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.83[ASN][1000 genomes] |
rs28895348 | 0.93[AMR][1000 genomes];0.80[ASN][1000 genomes] |
rs4242461 | 0.92[ASN][1000 genomes] |
rs4349993 | 0.89[ASN][1000 genomes] |
rs4367560 | 0.92[ASN][1000 genomes] |
rs4367564 | 0.90[ASN][1000 genomes] |
rs4376507 | 0.90[ASN][1000 genomes] |
rs4416833 | 0.90[ASN][1000 genomes] |
rs4449807 | 0.90[ASN][1000 genomes] |
rs4523268 | 0.90[ASN][1000 genomes] |
rs4524809 | 0.92[ASN][1000 genomes] |
rs4570174 | 0.92[ASN][1000 genomes] |
rs4607635 | 0.92[ASN][1000 genomes] |
rs4873450 | 0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[ASN][1000 genomes] |
rs4873455 | 0.90[ASN][1000 genomes] |
rs56370038 | 0.81[AFR][1000 genomes];0.97[ASN][1000 genomes] |
rs57368926 | 0.93[AMR][1000 genomes];0.80[ASN][1000 genomes] |
rs57879337 | 0.93[AMR][1000 genomes] |
rs59878004 | 0.83[AFR][1000 genomes];0.87[AMR][1000 genomes] |
rs6984454 | 0.90[ASN][1000 genomes] |
rs73676273 | 0.81[AMR][1000 genomes] |
rs73678730 | 0.93[AMR][1000 genomes];0.80[ASN][1000 genomes] |
rs73678735 | 0.93[AMR][1000 genomes];0.80[ASN][1000 genomes] |
rs73678750 | 1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs7823310 | 0.95[ASN][1000 genomes] |
rs7835915 | 0.90[ASN][1000 genomes] |
rs7845427 | 0.83[ASN][1000 genomes] |
rs921330 | 0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.80[ASN][1000 genomes] |
rs9298318 | 0.90[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv916392 | chr8:50827638-51395140 | Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
2 | nsv948436 | chr8:51115028-51917504 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
3 | esv1828291 | chr8:51225111-51246823 | ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
4 | esv1832233 | chr8:51225111-51256438 | ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
5 | esv1827302 | chr8:51225496-51246823 | Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Enhancers | Chromatin interactive region | n/a | inside rSNPs | diseases |
6 | nsv831312 | chr8:51239772-51422844 | Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr8:51241000-51242600 | ZNF genes & repeats | Ganglion Eminence derived primary cultured neurospheres | brain |
2 | chr8:51241000-51243000 | ZNF genes & repeats | Cortex derived primary cultured neurospheres | brain |
3 | chr8:51241400-51242400 | ZNF genes & repeats | H1 Cell Line | embryonic stem cell |
4 | chr8:51242000-51246800 | Weak transcription | Liver | Liver |