Variant report

Variant	rs10957899
Chromosome Location	chr8:51307757-51307758
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10090266	0.89[JPT][hapmap];0.97[AMR][1000 genomes]
rs10101856	0.89[JPT][hapmap];0.97[AMR][1000 genomes]
rs10103929	0.89[JPT][hapmap]
rs10107397	0.88[JPT][hapmap]
rs10282933	0.88[JPT][hapmap]
rs10504101	1.00[JPT][hapmap]
rs11773993	0.81[CHB][hapmap]
rs11993995	0.90[ASN][1000 genomes]
rs11998724	0.92[ASN][1000 genomes]
rs12216754	0.89[JPT][hapmap]
rs12541766	0.89[JPT][hapmap];0.94[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12548514	0.84[AFR][1000 genomes]
rs1450123	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs1481469	0.89[JPT][hapmap];0.94[YRI][hapmap]
rs1481476	0.89[JPT][hapmap];0.94[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1481477	0.89[JPT][hapmap];0.94[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16914623	1.00[JPT][hapmap]
rs16914661	0.89[JPT][hapmap]
rs16914702	1.00[JPT][hapmap]
rs16914726	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs16914760	0.90[CHB][hapmap]
rs16914778	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs16914815	0.83[AMR][1000 genomes]
rs16914864	0.83[AMR][1000 genomes]
rs2169183	1.00[JPT][hapmap]
rs28513173	0.90[ASN][1000 genomes]
rs28869785	0.90[ASN][1000 genomes]
rs2923058	0.81[CHB][hapmap]
rs3919897	0.89[JPT][hapmap];0.90[AMR][1000 genomes]
rs4242461	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4349993	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4367560	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4367564	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4376507	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4416833	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4449807	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4523268	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4524809	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4535749	0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4538902	0.89[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs4570174	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4607635	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4873441	0.89[JPT][hapmap]
rs4873445	1.00[JPT][hapmap]
rs4873450	1.00[JPT][hapmap]
rs4873455	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56370038	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6473124	0.89[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs6984454	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73678750	0.90[ASN][1000 genomes]
rs7823310	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7835915	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7845427	0.92[ASN][1000 genomes]
rs921330	0.89[JPT][hapmap]
rs9298318	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9643435	0.89[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916392	chr8:50827638-51395140	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv948436	chr8:51115028-51917504	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv831312	chr8:51239772-51422844	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:51300000-51319800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr8:51306400-51309000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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