Variant report

Variant	rs4535749
Chromosome Location	chr8:51311364-51311365
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10957899	0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10957909	0.83[AMR][1000 genomes]
rs11998724	0.81[ASN][1000 genomes]
rs12541766	0.80[AMR][1000 genomes]
rs1481476	0.80[AMR][1000 genomes]
rs1481477	0.80[AMR][1000 genomes]
rs4242461	0.87[ASN][1000 genomes]
rs4349993	0.91[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4367560	0.87[ASN][1000 genomes]
rs4367564	0.89[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4376507	0.91[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4416833	0.88[ASN][1000 genomes]
rs4449807	0.91[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4523268	0.91[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4524809	0.87[ASN][1000 genomes]
rs4570174	0.87[ASN][1000 genomes]
rs4607635	0.87[ASN][1000 genomes]
rs4873455	0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs56370038	0.83[ASN][1000 genomes]
rs6984454	0.91[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7823310	0.84[ASN][1000 genomes]
rs7835915	0.91[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7845427	0.81[ASN][1000 genomes]
rs9298318	0.91[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9643435	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916392	chr8:50827638-51395140	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv948436	chr8:51115028-51917504	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv831312	chr8:51239772-51422844	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:51300000-51319800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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