Variant report

Variant	rs10957909
Chromosome Location	chr8:51334010-51334011
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10090266	0.92[ASN][1000 genomes]
rs10090468	0.87[ASN][1000 genomes]
rs10101856	0.92[ASN][1000 genomes]
rs10957915	0.87[ASN][1000 genomes]
rs10957916	0.87[ASN][1000 genomes]
rs11783146	0.87[ASN][1000 genomes]
rs12216754	0.91[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12541766	0.81[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs13266691	0.87[ASN][1000 genomes]
rs1383820	0.81[ASN][1000 genomes]
rs1471577	0.81[ASN][1000 genomes]
rs1471578	0.81[ASN][1000 genomes]
rs1481469	0.93[ASN][1000 genomes]
rs1481476	0.82[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs1481477	0.93[ASN][1000 genomes]
rs2062038	0.87[ASN][1000 genomes]
rs2392627	0.87[ASN][1000 genomes]
rs3919897	0.92[ASN][1000 genomes]
rs4349993	0.91[AMR][1000 genomes]
rs4367564	0.88[AMR][1000 genomes]
rs4376507	0.91[AMR][1000 genomes]
rs4449807	0.91[AMR][1000 genomes]
rs4523268	0.91[AMR][1000 genomes]
rs4535749	0.83[AMR][1000 genomes]
rs4538902	0.93[ASN][1000 genomes]
rs4873147	0.81[ASN][1000 genomes]
rs4873457	0.87[ASN][1000 genomes]
rs4873458	0.81[ASN][1000 genomes]
rs6473124	0.93[ASN][1000 genomes]
rs6983589	0.87[ASN][1000 genomes]
rs6984454	0.91[AMR][1000 genomes]
rs7015139	0.87[ASN][1000 genomes]
rs7835915	0.91[AMR][1000 genomes]
rs7842092	0.87[ASN][1000 genomes]
rs9298318	0.91[AMR][1000 genomes]
rs9298323	0.87[ASN][1000 genomes]
rs9643435	0.94[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs9650165	0.87[ASN][1000 genomes]
rs9650166	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916392	chr8:50827638-51395140	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv948436	chr8:51115028-51917504	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv831312	chr8:51239772-51422844	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv916262	chr8:51322341-51437077	ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:51320600-51343200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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