Variant report

Variant	rs1383820
Chromosome Location	chr8:51360604-51360605
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10090266	0.81[ASN][1000 genomes]
rs10090468	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10101856	0.81[ASN][1000 genomes]
rs10808829	0.83[ASN][1000 genomes]
rs10957909	0.81[ASN][1000 genomes]
rs10957915	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10957916	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11775411	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11783146	0.97[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs12216754	0.83[ASN][1000 genomes]
rs12545254	0.84[EUR][1000 genomes]
rs12546744	0.93[EUR][1000 genomes]
rs12546758	0.87[EUR][1000 genomes]
rs13248847	0.87[EUR][1000 genomes]
rs13258865	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13266691	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13274680	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1471577	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1471578	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1481472	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1481475	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1483636	0.81[EUR][1000 genomes]
rs1483645	0.81[EUR][1000 genomes]
rs1542613	0.81[EUR][1000 genomes]
rs1542615	0.81[EUR][1000 genomes]
rs1967007	0.86[AMR][1000 genomes]
rs1971259	0.81[EUR][1000 genomes]
rs2062038	0.99[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2068238	0.87[EUR][1000 genomes]
rs2392627	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2392699	0.87[EUR][1000 genomes]
rs2623207	0.81[EUR][1000 genomes]
rs2623215	0.81[EUR][1000 genomes]
rs2625739	0.85[EUR][1000 genomes]
rs2625750	0.81[EUR][1000 genomes]
rs2625751	0.81[EUR][1000 genomes]
rs2625753	0.81[EUR][1000 genomes]
rs310557	0.87[EUR][1000 genomes]
rs3919897	0.81[ASN][1000 genomes]
rs4577970	0.87[EUR][1000 genomes]
rs4873147	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4873149	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4873457	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4873458	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4873459	0.98[EUR][1000 genomes]
rs6473144	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6983589	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7007612	0.86[EUR][1000 genomes]
rs7015139	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7817955	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7836540	0.80[ASN][1000 genomes]
rs7839067	0.82[ASN][1000 genomes]
rs7842092	0.97[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs9298323	0.93[ASN][1000 genomes]
rs9643435	0.81[ASN][1000 genomes]
rs9650165	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9650166	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916392	chr8:50827638-51395140	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv948436	chr8:51115028-51917504	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv831312	chr8:51239772-51422844	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv916262	chr8:51322341-51437077	ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:51360400-51360800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr8:51360600-51361400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

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