Variant report

Variant	rs7839067
Chromosome Location	chr8:51337745-51337746
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10090468	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10808829	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10957914	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs10957915	1.00[CEU][hapmap];0.86[CHB][hapmap];0.86[CHD][hapmap];0.88[JPT][hapmap];0.84[MEX][hapmap];0.84[MKK][hapmap];0.93[TSI][hapmap];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10957916	1.00[CEU][hapmap];0.86[CHB][hapmap];0.86[CHD][hapmap];0.88[JPT][hapmap];0.80[MEX][hapmap];0.93[TSI][hapmap];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11783146	0.88[ASN][1000 genomes]
rs12546744	0.91[CEU][hapmap];0.81[EUR][1000 genomes]
rs13266691	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1383815	0.82[CHB][hapmap]
rs1383820	0.82[ASN][1000 genomes]
rs1471577	0.82[ASN][1000 genomes]
rs1471578	0.80[MEX][hapmap];0.84[MKK][hapmap];0.90[TSI][hapmap];0.82[ASN][1000 genomes]
rs1481467	0.82[CHB][hapmap]
rs1481468	0.82[CHB][hapmap];0.81[ASN][1000 genomes]
rs1481472	0.90[TSI][hapmap]
rs1542615	0.90[TSI][hapmap]
rs1971259	0.90[TSI][hapmap]
rs2062038	1.00[CEU][hapmap];0.86[CHB][hapmap];0.88[JPT][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2170373	0.91[CEU][hapmap];0.82[CHB][hapmap];0.98[EUR][1000 genomes]
rs2392627	1.00[CEU][hapmap];0.86[CHB][hapmap];0.86[CHD][hapmap];0.88[JPT][hapmap];0.80[MEX][hapmap];0.93[TSI][hapmap];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2392699	0.90[TSI][hapmap]
rs2623207	0.86[TSI][hapmap]
rs310574	0.90[TSI][hapmap]
rs4577970	0.90[TSI][hapmap]
rs4873147	0.80[CHD][hapmap];0.84[MKK][hapmap];0.90[TSI][hapmap];0.82[ASN][1000 genomes]
rs4873457	1.00[CEU][hapmap];0.86[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.93[TSI][hapmap];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4873458	0.81[CHD][hapmap];0.80[MEX][hapmap];0.84[MKK][hapmap];0.90[TSI][hapmap];0.82[ASN][1000 genomes]
rs6983589	1.00[CEU][hapmap];0.86[CHB][hapmap];0.88[JPT][hapmap];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6997739	0.82[CHB][hapmap]
rs7015139	1.00[CEU][hapmap];0.86[CHB][hapmap];0.88[JPT][hapmap];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7817955	0.81[CHD][hapmap];0.90[TSI][hapmap]
rs7842092	0.86[CHB][hapmap];0.88[JPT][hapmap];0.88[ASN][1000 genomes]
rs9298323	0.86[CHB][hapmap];0.86[CHD][hapmap];0.88[ASN][1000 genomes]
rs9650165	1.00[CEU][hapmap];0.86[CHB][hapmap];0.85[CHD][hapmap];0.88[JPT][hapmap];0.80[MEX][hapmap];0.93[TSI][hapmap];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9650166	1.00[CEU][hapmap];0.86[CHB][hapmap];0.88[JPT][hapmap];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916392	chr8:50827638-51395140	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv948436	chr8:51115028-51917504	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv831312	chr8:51239772-51422844	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv916262	chr8:51322341-51437077	ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:51320600-51343200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links