Variant report

Variant	rs12546744
Chromosome Location	chr8:51356412-51356413
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10090468	0.95[EUR][1000 genomes]
rs10808829	0.92[CEU][hapmap];0.81[EUR][1000 genomes]
rs10808836	0.83[ASN][1000 genomes]
rs10957914	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10957915	0.91[CEU][hapmap];0.81[CHB][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10957916	0.91[CEU][hapmap];0.81[CHB][hapmap];0.95[EUR][1000 genomes]
rs10957927	0.97[ASN][1000 genomes]
rs1114500	0.94[CHB][hapmap];0.80[JPT][hapmap]
rs1114808	0.93[CHB][hapmap]
rs11775411	0.90[EUR][1000 genomes]
rs11781401	0.93[CHB][hapmap]
rs12546758	0.81[EUR][1000 genomes]
rs13248847	0.81[EUR][1000 genomes]
rs13258865	0.94[CHB][hapmap];0.90[EUR][1000 genomes]
rs13266691	0.98[EUR][1000 genomes]
rs13274680	0.90[EUR][1000 genomes]
rs1383815	0.88[CHB][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs1383820	0.93[EUR][1000 genomes]
rs1471577	0.93[EUR][1000 genomes]
rs1471578	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1481467	0.88[CHB][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs1481468	0.88[CHB][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes]
rs1481472	0.90[EUR][1000 genomes]
rs1481475	0.93[EUR][1000 genomes]
rs1481482	0.93[CHB][hapmap]
rs1483643	0.93[CHB][hapmap]
rs1483644	0.94[CHB][hapmap]
rs1904997	0.93[CHB][hapmap]
rs1994031	0.93[CHB][hapmap]
rs2062038	0.92[CEU][hapmap];0.81[CHB][hapmap];0.95[EUR][1000 genomes]
rs2068238	0.81[EUR][1000 genomes]
rs2128000	0.94[CHB][hapmap];0.80[JPT][hapmap]
rs2170373	1.00[CEU][hapmap];0.88[CHB][hapmap];0.91[JPT][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2251415	0.94[CHB][hapmap]
rs2392627	0.91[CEU][hapmap];0.81[CHB][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2392699	0.81[EUR][1000 genomes]
rs2448941	0.93[CHB][hapmap]
rs2467205	0.94[CHB][hapmap];0.80[JPT][hapmap];0.82[ASN][1000 genomes]
rs2623225	0.93[CHB][hapmap]
rs2625736	0.94[CHB][hapmap];0.80[JPT][hapmap]
rs310557	0.81[EUR][1000 genomes]
rs310558	0.94[CHB][hapmap];0.80[JPT][hapmap]
rs4442158	0.94[CHB][hapmap];0.80[JPT][hapmap]
rs4577970	0.81[EUR][1000 genomes]
rs4873147	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4873149	0.90[EUR][1000 genomes]
rs4873457	0.91[CEU][hapmap];0.81[CHB][hapmap];0.95[EUR][1000 genomes]
rs4873458	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4873459	0.94[CHB][hapmap];0.91[JPT][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6473144	0.93[EUR][1000 genomes]
rs6983589	0.92[CEU][hapmap];0.81[CHB][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6997739	0.88[CHB][hapmap];0.86[ASN][1000 genomes]
rs7009024	0.80[CHB][hapmap];0.81[JPT][hapmap]
rs7015139	0.92[CEU][hapmap];0.86[CHB][hapmap];0.95[EUR][1000 genomes]
rs7817955	0.93[EUR][1000 genomes]
rs7827319	0.94[CHB][hapmap]
rs7839067	0.91[CEU][hapmap];0.81[EUR][1000 genomes]
rs7842092	0.81[CHB][hapmap]
rs9298323	0.81[CHB][hapmap]
rs9650165	0.91[CEU][hapmap];0.81[CHB][hapmap];0.95[EUR][1000 genomes]
rs9650166	0.91[CEU][hapmap];0.81[CHB][hapmap];0.95[EUR][1000 genomes]
rs996524	0.94[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916392	chr8:50827638-51395140	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv948436	chr8:51115028-51917504	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv831312	chr8:51239772-51422844	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv916262	chr8:51322341-51437077	ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:51355600-51356600	Enhancers	Liver	Liver
2	chr8:51356200-51356600	Enhancers	Fetal Intestine Small	intestine
3	chr8:51356400-51357000	Enhancers	Fetal Intestine Large	intestine

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