Variant report
| Variant | rs10957927 |
|---|---|
| Chromosome Location | chr8:51367271-51367272 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs10090468 | 0.81[ASN][1000 genomes] |
| rs10808836 | 0.86[ASN][1000 genomes] |
| rs10957910 | 0.81[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs10957914 | 0.86[ASN][1000 genomes] |
| rs10957915 | 0.81[ASN][1000 genomes] |
| rs10957916 | 0.81[ASN][1000 genomes] |
| rs11783146 | 0.81[ASN][1000 genomes] |
| rs12543175 | 0.87[EUR][1000 genomes] |
| rs12546744 | 0.97[ASN][1000 genomes] |
| rs13266691 | 0.81[ASN][1000 genomes] |
| rs1383815 | 0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs1481467 | 0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs1481468 | 0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs2062038 | 0.81[ASN][1000 genomes] |
| rs2170373 | 0.87[ASN][1000 genomes] |
| rs2392627 | 0.81[ASN][1000 genomes] |
| rs2467205 | 0.85[ASN][1000 genomes] |
| rs4873457 | 0.81[ASN][1000 genomes] |
| rs4873459 | 0.94[ASN][1000 genomes] |
| rs6983589 | 0.81[ASN][1000 genomes] |
| rs6997739 | 0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs7009024 | 0.87[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs7015139 | 0.81[ASN][1000 genomes] |
| rs7842092 | 0.81[ASN][1000 genomes] |
| rs9298323 | 0.81[ASN][1000 genomes] |
| rs9650165 | 0.81[ASN][1000 genomes] |
| rs9650166 | 0.81[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv916392 | chr8:50827638-51395140 | Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv948436 | chr8:51115028-51917504 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 3 | nsv831312 | chr8:51239772-51422844 | Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv916262 | chr8:51322341-51437077 | ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 5 | nsv520800 | chr8:51365953-51371910 | Weak transcription Bivalent Enhancer Enhancers Strong transcription | n/a | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:51364800-51369800 | Weak transcription | hESC Derived CD56+ Ectoderm Cultured Cells | ES cell derived |
| 2 | chr8:51365800-51375800 | Weak transcription | Cortex derived primary cultured neurospheres | brain |
| 3 | chr8:51366200-51369000 | Weak transcription | Ganglion Eminence derived primary cultured neurospheres | brain |
