Variant report

Variant	rs56370038
Chromosome Location	chr8:51291508-51291509
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10090266	0.90[AMR][1000 genomes]
rs10101856	0.90[AMR][1000 genomes]
rs10957899	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11993995	0.97[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11998724	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12541766	0.86[AMR][1000 genomes]
rs1450123	0.97[ASN][1000 genomes]
rs1481476	0.86[AMR][1000 genomes]
rs1481477	0.86[AMR][1000 genomes]
rs16914623	0.83[ASN][1000 genomes]
rs16914702	0.83[ASN][1000 genomes]
rs16914726	0.97[ASN][1000 genomes]
rs16914778	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs28513173	0.97[ASN][1000 genomes]
rs28869785	0.81[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs3919897	0.84[AMR][1000 genomes]
rs4242461	0.90[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4349993	0.92[ASN][1000 genomes]
rs4367560	0.90[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4367564	0.94[ASN][1000 genomes]
rs4376507	0.94[ASN][1000 genomes]
rs4416833	0.94[ASN][1000 genomes]
rs4449807	0.94[ASN][1000 genomes]
rs4523268	0.94[ASN][1000 genomes]
rs4524809	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4535749	0.83[ASN][1000 genomes]
rs4538902	0.81[AMR][1000 genomes]
rs4570174	0.90[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4607635	0.90[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4873450	0.83[ASN][1000 genomes]
rs4873455	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6473124	0.81[AMR][1000 genomes]
rs6984454	0.94[ASN][1000 genomes]
rs73678750	0.81[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs7823310	0.96[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7835915	0.94[ASN][1000 genomes]
rs7845427	0.86[ASN][1000 genomes]
rs9298318	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916392	chr8:50827638-51395140	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv948436	chr8:51115028-51917504	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv831312	chr8:51239772-51422844	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:51290800-51292400	Weak transcription	Pancreas	Pancrea
2	chr8:51291200-51291600	Enhancers	Fetal Intestine Small	intestine

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