Variant report

Variant	rs73678750
Chromosome Location	chr8:51257418-51257419
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:51252100..51253925-chr8:51256216..51258662,2	MCF-7	breast:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10086021	0.90[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs10103929	0.90[AMR][1000 genomes]
rs10504101	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10957899	0.90[ASN][1000 genomes]
rs11993995	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11998724	0.90[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1450123	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16914623	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs16914661	0.90[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs16914702	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs16914726	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16914760	0.81[ASN][1000 genomes]
rs16914778	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28496647	0.87[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs28513173	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28869785	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28886897	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs28895348	0.90[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs4242461	0.92[ASN][1000 genomes]
rs4349993	0.89[ASN][1000 genomes]
rs4367560	0.92[ASN][1000 genomes]
rs4367564	0.90[ASN][1000 genomes]
rs4376507	0.90[ASN][1000 genomes]
rs4416833	0.90[ASN][1000 genomes]
rs4449807	0.90[ASN][1000 genomes]
rs4523268	0.90[ASN][1000 genomes]
rs4524809	0.92[ASN][1000 genomes]
rs4570174	0.92[ASN][1000 genomes]
rs4607635	0.92[ASN][1000 genomes]
rs4873450	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4873455	0.90[ASN][1000 genomes]
rs56370038	0.81[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs57368926	0.90[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs57879337	0.90[AMR][1000 genomes]
rs59878004	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs6984454	0.90[ASN][1000 genomes]
rs73678730	0.90[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs73678735	0.90[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs7823310	0.95[ASN][1000 genomes]
rs7835915	0.90[ASN][1000 genomes]
rs7845427	0.83[ASN][1000 genomes]
rs921330	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs9298318	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916392	chr8:50827638-51395140	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv948436	chr8:51115028-51917504	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv831312	chr8:51239772-51422844	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:51243200-51271600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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