Variant report

Variant	rs4440649
Chromosome Location	chr8:51379977-51379978
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 90 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:85)

rs_ID	r²[population]
rs10090266	0.84[CHB][hapmap]
rs10090468	0.90[EUR][1000 genomes]
rs10101856	0.84[CHB][hapmap]
rs1017841	0.85[CEU][hapmap];1.00[CHB][hapmap]
rs10957915	0.92[CHB][hapmap];0.90[EUR][1000 genomes]
rs10957916	0.92[CHB][hapmap];0.83[LWK][hapmap];0.84[MEX][hapmap];0.90[EUR][1000 genomes]
rs11775411	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11995834	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap]
rs12216754	0.84[CHB][hapmap]
rs12541766	0.84[CHB][hapmap]
rs12543175	0.91[ASN][1000 genomes]
rs12544937	0.91[ASN][1000 genomes]
rs12545254	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12546744	0.90[EUR][1000 genomes]
rs12546758	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13248847	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13251708	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13258865	1.00[CEU][hapmap];0.86[JPT][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13266691	0.92[EUR][1000 genomes]
rs13274680	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1383818	1.00[CHB][hapmap];0.94[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.93[YRI][hapmap]
rs1383820	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1471577	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1471578	0.85[CEU][hapmap];1.00[CHB][hapmap];0.84[MEX][hapmap];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1481469	0.84[CHB][hapmap]
rs1481472	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.93[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1481475	0.85[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1481476	0.84[CHB][hapmap]
rs1481477	0.84[CHB][hapmap]
rs1481482	0.95[MEX][hapmap];0.80[AMR][1000 genomes]
rs1483636	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1483643	0.95[MEX][hapmap];0.80[AMR][1000 genomes]
rs1483644	0.80[AMR][1000 genomes]
rs1483645	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1542613	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1542615	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs192844	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1971259	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1994031	0.95[MEX][hapmap]
rs2062038	0.92[CHB][hapmap];0.90[EUR][1000 genomes]
rs2068238	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2251415	0.80[AMR][1000 genomes]
rs2392627	0.92[CHB][hapmap];0.82[LWK][hapmap];0.84[MEX][hapmap];0.92[EUR][1000 genomes]
rs2392699	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[YRI][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2623207	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.93[YRI][hapmap];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2623211	0.80[AMR][1000 genomes]
rs2623215	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2623216	0.80[AMR][1000 genomes]
rs2623224	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];0.88[GIH][hapmap];0.85[JPT][hapmap];0.83[LWK][hapmap];0.94[MEX][hapmap];0.93[YRI][hapmap];0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2623225	0.80[AMR][1000 genomes]
rs2625739	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2625750	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2625751	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2625752	0.80[AMR][1000 genomes]
rs2625753	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2625755	0.80[AMR][1000 genomes]
rs2930096	0.80[AMR][1000 genomes]
rs310557	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs310562	0.80[LWK][hapmap];0.86[YRI][hapmap]
rs310570	1.00[CEU][hapmap]
rs310574	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.92[GIH][hapmap];0.86[JPT][hapmap];1.00[LWK][hapmap];0.93[YRI][hapmap]
rs310576	0.86[YRI][hapmap]
rs3919897	0.84[CHB][hapmap]
rs4538902	0.84[CHB][hapmap]
rs4577970	0.86[CEU][hapmap];1.00[CHB][hapmap];0.84[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];0.95[MEX][hapmap];0.86[YRI][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4873147	0.85[CEU][hapmap];1.00[CHB][hapmap];0.83[GIH][hapmap];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4873149	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4873457	0.92[CHB][hapmap];0.83[LWK][hapmap];0.83[MEX][hapmap];0.90[EUR][1000 genomes]
rs4873458	0.85[CEU][hapmap];1.00[CHB][hapmap];0.83[GIH][hapmap];0.84[MEX][hapmap];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4873459	0.94[EUR][1000 genomes]
rs6473124	0.84[CHB][hapmap]
rs6473144	0.85[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6983589	0.92[CHB][hapmap];0.92[EUR][1000 genomes]
rs7007612	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7015139	0.92[CHB][hapmap];0.90[EUR][1000 genomes]
rs7817955	0.85[CEU][hapmap];1.00[CHB][hapmap];0.83[LWK][hapmap];0.89[MEX][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7826421	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap]
rs7836540	1.00[ASN][1000 genomes]
rs7842092	0.92[CHB][hapmap]
rs9298323	0.92[CHB][hapmap]
rs9643435	0.84[CHB][hapmap]
rs9650165	0.92[CHB][hapmap];0.83[LWK][hapmap];0.84[MEX][hapmap];0.90[EUR][1000 genomes]
rs9650166	0.92[CHB][hapmap];0.90[EUR][1000 genomes]
rs996523	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs996524	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916392	chr8:50827638-51395140	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv948436	chr8:51115028-51917504	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv831312	chr8:51239772-51422844	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv916262	chr8:51322341-51437077	ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv429914	chr8:51371447-51617647	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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