Variant report

Variant	rs1254672
Chromosome Location	chr10:44473731-44473732
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11238711	1.00[ASN][1000 genomes]
rs1147905	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11598807	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12266297	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1254675	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1254847	0.83[YRI][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1254849	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1262195	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1613279	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1613984	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17463850	1.00[ASN][1000 genomes]
rs1749800	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2005094	1.00[ASN][1000 genomes]
rs2764793	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2764794	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2764795	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2764796	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2798996	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61856550	1.00[ASN][1000 genomes]
rs61859388	1.00[ASN][1000 genomes]
rs61859402	1.00[ASN][1000 genomes]
rs61861585	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv466884	chr10:44473036-44515130	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv550698	chr10:44473036-44515130	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44462000-44474400	Weak transcription	Left Ventricle	heart
2	chr10:44462400-44475200	Weak transcription	Right Atrium	heart
3	chr10:44466400-44476000	Weak transcription	Right Ventricle	heart
4	chr10:44469800-44482800	Weak transcription	Gastric	stomach
5	chr10:44470000-44475000	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr10:44470200-44474400	Weak transcription	Fetal Muscle Leg	muscle
7	chr10:44472600-44476800	Enhancers	Primary hematopoietic stem cells	blood
8	chr10:44472600-44477200	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr10:44472800-44473800	Enhancers	Monocytes-CD14+_RO01746	blood
10	chr10:44473000-44473800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
11	chr10:44473000-44474400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr10:44473200-44473800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr10:44473200-44473800	Enhancers	Adipose Nuclei	Adipose
14	chr10:44473200-44474200	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr10:44473600-44473800	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr10:44473600-44475000	Weak transcription	Spleen	Spleen
17	chr10:44473600-44475200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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