Variant report

Variant	rs1254849
Chromosome Location	chr10:44437185-44437186
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:44431204..44432720-chr10:44436776..44439206,2	MCF-7	breast:
2	chr10:44436249..44437922-chr10:44454148..44455778,2	MCF-7	breast:
3	chr10:44436082..44438732-chr10:44441086..44443148,2	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11238695	1.00[ASN][1000 genomes]
rs11238704	1.00[ASN][1000 genomes]
rs11238711	1.00[ASN][1000 genomes]
rs1147905	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11598807	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12266297	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1254672	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1254675	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1254847	0.91[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1262195	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1613279	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1613984	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17463850	1.00[ASN][1000 genomes]
rs1749800	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2005094	1.00[ASN][1000 genomes]
rs2764793	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2764794	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2764795	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2764796	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2798996	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61856550	1.00[ASN][1000 genomes]
rs61859388	1.00[ASN][1000 genomes]
rs61859402	1.00[ASN][1000 genomes]
rs61861563	1.00[ASN][1000 genomes]
rs61861566	1.00[ASN][1000 genomes]
rs61861567	1.00[ASN][1000 genomes]
rs61861585	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051921	chr10:44378011-44458880	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44422800-44437600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:44434200-44438400	Enhancers	Fetal Brain Male	brain
3	chr10:44434200-44438800	Enhancers	Fetal Muscle Leg	muscle
4	chr10:44434400-44438200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr10:44434400-44438600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr10:44434400-44438600	Enhancers	NHDF-Ad	bronchial
7	chr10:44434400-44441600	Enhancers	Fetal Heart	heart
8	chr10:44434600-44437600	Enhancers	Fetal Muscle Trunk	muscle
9	chr10:44434600-44439200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr10:44434600-44439200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr10:44434800-44438800	Enhancers	Fetal Stomach	stomach
12	chr10:44434800-44439200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr10:44435000-44437600	Enhancers	Right Ventricle	heart
14	chr10:44435000-44438000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr10:44435000-44438800	Enhancers	Fetal Lung	lung
16	chr10:44435000-44439600	Enhancers	Fetal Thymus	thymus
17	chr10:44435200-44441200	Enhancers	Left Ventricle	heart
18	chr10:44435400-44437400	Enhancers	Ovary	ovary
19	chr10:44435400-44438000	Enhancers	Fetal Brain Female	brain
20	chr10:44435400-44438400	Enhancers	NHLF	lung
21	chr10:44435400-44438600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr10:44435400-44441000	Enhancers	Right Atrium	heart
23	chr10:44435600-44437800	Enhancers	Skeletal Muscle Female	skeletal muscle
24	chr10:44435600-44437800	Enhancers	Spleen	Spleen
25	chr10:44435600-44438000	Enhancers	Duodenum Mucosa	Duodenum
26	chr10:44435600-44438600	Enhancers	Stomach Smooth Muscle	stomach
27	chr10:44435800-44437200	Enhancers	Colon Smooth Muscle	Colon
28	chr10:44435800-44437400	Enhancers	Duodenum Smooth Muscle	Duodenum
29	chr10:44435800-44438400	Enhancers	Skeletal Muscle Male	skeletal muscle
30	chr10:44435800-44438400	Enhancers	Stomach Mucosa	stomach
31	chr10:44435800-44439200	Weak transcription	Lung	lung
32	chr10:44436000-44440600	Weak transcription	Osteobl	bone
33	chr10:44436200-44437400	Weak transcription	Primary hematopoietic stem cells	blood
34	chr10:44436200-44437400	Weak transcription	Brain Cingulate Gyrus	brain
35	chr10:44436400-44437600	Enhancers	Gastric	stomach
36	chr10:44436400-44437800	Enhancers	Pancreas	Pancrea
37	chr10:44436400-44438000	Weak transcription	GM12878-XiMat	blood
38	chr10:44436400-44440600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr10:44436800-44437200	Weak transcription	Fetal Kidney	kidney

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