Variant report

Variant	rs2798996
Chromosome Location	chr10:44438425-44438426
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:44431204..44432720-chr10:44436776..44439206,2	MCF-7	breast:
2	chr10:44436082..44438732-chr10:44441086..44443148,2	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11238695	1.00[ASN][1000 genomes]
rs11238704	1.00[ASN][1000 genomes]
rs11238711	1.00[ASN][1000 genomes]
rs1147905	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11598807	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12266297	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1254672	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1254675	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1254847	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1254849	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1262195	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1613279	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1613984	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17463850	1.00[ASN][1000 genomes]
rs1749800	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2005094	1.00[ASN][1000 genomes]
rs2764793	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2764794	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2764795	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2764796	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61856550	1.00[ASN][1000 genomes]
rs61859388	1.00[ASN][1000 genomes]
rs61859402	1.00[ASN][1000 genomes]
rs61861563	1.00[ASN][1000 genomes]
rs61861566	1.00[ASN][1000 genomes]
rs61861567	1.00[ASN][1000 genomes]
rs61861585	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051921	chr10:44378011-44458880	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	esv3420933	chr10:44437771-44440319	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a
3	esv3402930	chr10:44438096-44440044	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44434200-44438800	Enhancers	Fetal Muscle Leg	muscle
2	chr10:44434400-44438600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr10:44434400-44438600	Enhancers	NHDF-Ad	bronchial
4	chr10:44434400-44441600	Enhancers	Fetal Heart	heart
5	chr10:44434600-44439200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr10:44434600-44439200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr10:44434800-44438800	Enhancers	Fetal Stomach	stomach
8	chr10:44434800-44439200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr10:44435000-44438800	Enhancers	Fetal Lung	lung
10	chr10:44435000-44439600	Enhancers	Fetal Thymus	thymus
11	chr10:44435200-44441200	Enhancers	Left Ventricle	heart
12	chr10:44435400-44438600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr10:44435400-44441000	Enhancers	Right Atrium	heart
14	chr10:44435600-44438600	Enhancers	Stomach Smooth Muscle	stomach
15	chr10:44435800-44439200	Weak transcription	Lung	lung
16	chr10:44436000-44440600	Weak transcription	Osteobl	bone
17	chr10:44436400-44440600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr10:44437400-44441400	Enhancers	Primary hematopoietic stem cells	blood
19	chr10:44437600-44438600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr10:44437600-44438600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
21	chr10:44437600-44440200	Weak transcription	Right Ventricle	heart
22	chr10:44437600-44460800	Weak transcription	Gastric	stomach
23	chr10:44438000-44439200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
24	chr10:44438000-44439800	Enhancers	GM12878-XiMat	blood
25	chr10:44438400-44438600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
26	chr10:44438400-44438600	Enhancers	Fetal Kidney	kidney
27	chr10:44438400-44438600	Enhancers	Ovary	ovary
28	chr10:44438400-44439600	Enhancers	Primary B cells from peripheral blood	blood
29	chr10:44438400-44439600	Enhancers	Thymus	Thymus
30	chr10:44438400-44439800	Enhancers	Primary T killer naive cells fromperipheralblood	blood

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