Variant report

Variant	rs12578135
Chromosome Location	chr12:10453403-10453404
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10743882	1.00[EUR][1000 genomes]
rs10845080	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs12581396	1.00[ASN][1000 genomes]
rs2537802	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2908447	1.00[EUR][1000 genomes]
rs2908448	1.00[EUR][1000 genomes]
rs3912115	1.00[EUR][1000 genomes]
rs3933794	1.00[EUR][1000 genomes]
rs56726194	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs57401526	1.00[ASN][1000 genomes]
rs58690639	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59051948	1.00[EUR][1000 genomes]
rs60130117	1.00[ASN][1000 genomes]
rs7135451	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7297855	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74062115	0.97[ASN][1000 genomes]
rs7966462	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9788026	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898757	chr12:10229281-10614641	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv832328	chr12:10398071-10620443	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv605	chr12:10448638-10494208	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:10447000-10453600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr12:10447400-10455000	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr12:10447800-10453600	Weak transcription	Primary T cells from cord blood	blood
4	chr12:10447800-10456600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr12:10449600-10453800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr12:10453200-10454400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
7	chr12:10453200-10461000	Weak transcription	Placenta	Placenta
8	chr12:10453400-10454600	Enhancers	Thymus	Thymus
9	chr12:10453400-10457000	Enhancers	Placenta Amnion	Placenta Amnion

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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