Variant report

Variant	rs7297855
Chromosome Location	chr12:10437066-10437067
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:10436832..10439225-chr12:10509141..10511407,2	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10743882	1.00[EUR][1000 genomes]
rs10845080	1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs11053742	0.85[AMR][1000 genomes]
rs12578135	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12581396	1.00[ASN][1000 genomes]
rs2537802	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2908447	1.00[EUR][1000 genomes]
rs2908448	1.00[EUR][1000 genomes]
rs3912115	1.00[EUR][1000 genomes]
rs3933794	1.00[EUR][1000 genomes]
rs56726194	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs57401526	1.00[ASN][1000 genomes]
rs58690639	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59051948	1.00[EUR][1000 genomes]
rs60130117	1.00[ASN][1000 genomes]
rs7135451	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7136070	0.92[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.93[YRI][hapmap];1.00[AMR][1000 genomes]
rs7304129	1.00[AMR][1000 genomes]
rs7307026	0.83[AMR][1000 genomes]
rs74060304	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74060319	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74060323	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74062112	1.00[AMR][1000 genomes]
rs74062115	0.97[ASN][1000 genomes]
rs74062120	1.00[AMR][1000 genomes]
rs74062125	0.85[AMR][1000 genomes]
rs74062129	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74062166	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74062168	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7953567	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7966462	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7977486	1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9788026	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898757	chr12:10229281-10614641	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv1054811	chr12:10350587-10440005	Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv832328	chr12:10398071-10620443	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	nsv557454	chr12:10417260-10440885	Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:10429000-10442000	Weak transcription	Left Ventricle	heart
2	chr12:10436000-10438200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr12:10436400-10441600	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr12:10436600-10437200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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