Variant report
Variant | rs74062129 |
---|---|
Chromosome Location | chr12:10408696-10408697 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
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No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr12:10407362..10410201-chr12:10824046..10826886,2 | K562 | blood: |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000060140 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs11053742 | 0.85[AMR][1000 genomes] |
rs7136070 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs7297855 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs7304129 | 1.00[AMR][1000 genomes] |
rs7307026 | 0.83[AMR][1000 genomes] |
rs74060304 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs74060319 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs74060323 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs74062112 | 1.00[AMR][1000 genomes] |
rs74062120 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs74062125 | 0.86[AFR][1000 genomes];0.85[AMR][1000 genomes] |
rs74062166 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs74062168 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs7953567 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs7977486 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv898757 | chr12:10229281-10614641 | Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 48 gene(s) | inside rSNPs | diseases |
2 | nsv1054811 | chr12:10350587-10440005 | Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 19 gene(s) | inside rSNPs | diseases |
3 | nsv832328 | chr12:10398071-10620443 | Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 25 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr12:10398800-10436200 | Weak transcription | Placenta | Placenta |