Variant report

Variant	rs7136070
Chromosome Location	chr12:10390561-10390562
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:10390106..10391990-chr12:10392432..10394861,2	K562	blood:
2	chr12:10389529..10391922-chr12:10874501..10876323,2	K562	blood:

Variant related genes	Relation type
ENSG00000060138	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11053742	0.86[YRI][hapmap];0.85[AMR][1000 genomes]
rs11838264	1.00[MEX][hapmap]
rs7297855	0.92[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.93[YRI][hapmap];1.00[AMR][1000 genomes]
rs7304129	1.00[AMR][1000 genomes]
rs7307026	0.83[AMR][1000 genomes]
rs74060304	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74060319	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74060323	1.00[AMR][1000 genomes]
rs74062112	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74062120	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74062125	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs74062129	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74062166	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74062168	1.00[AMR][1000 genomes]
rs7953567	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7966462	1.00[MEX][hapmap]
rs7977486	1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898757	chr12:10229281-10614641	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv1054811	chr12:10350587-10440005	Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:10376400-10395000	Weak transcription	Pancreas	Pancrea
2	chr12:10376400-10397600	Weak transcription	Aorta	Aorta
3	chr12:10377200-10394200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr12:10377200-10394600	Weak transcription	Stomach Smooth Muscle	stomach
5	chr12:10377200-10399000	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr12:10377800-10404400	Weak transcription	Left Ventricle	heart
7	chr12:10380200-10395800	Weak transcription	Thymus	Thymus
8	chr12:10387200-10396800	Weak transcription	Liver	Liver
9	chr12:10387400-10392000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr12:10388400-10392000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
11	chr12:10388800-10390600	Enhancers	Primary T cells fromperipheralblood	blood
12	chr12:10389200-10390600	Weak transcription	Brain Anterior Caudate	brain
13	chr12:10389200-10394400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr12:10389600-10391400	Weak transcription	Fetal Lung	lung
15	chr12:10389600-10391600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr12:10390200-10393400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr12:10390400-10392800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr12:10390400-10392800	Weak transcription	Placenta	Placenta
19	chr12:10390400-10393200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr12:10390400-10394800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links