Variant report

Variant	rs11053742
Chromosome Location	chr12:10467078-10467079
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12298271	0.87[AMR][1000 genomes]
rs12309578	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12319802	0.87[AFR][1000 genomes]
rs2537798	0.87[AMR][1000 genomes]
rs56133613	0.98[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7136070	0.86[YRI][hapmap];0.85[AMR][1000 genomes]
rs7297855	0.85[AMR][1000 genomes]
rs7303481	0.87[AMR][1000 genomes]
rs7304129	0.85[AMR][1000 genomes]
rs74060304	0.85[AMR][1000 genomes]
rs74060319	0.85[AMR][1000 genomes]
rs74060323	0.85[AMR][1000 genomes]
rs74062112	0.85[AMR][1000 genomes]
rs74062120	0.85[AMR][1000 genomes]
rs74062129	0.85[AMR][1000 genomes]
rs74062166	0.85[AMR][1000 genomes]
rs74062168	0.85[AMR][1000 genomes]
rs7953567	0.85[AMR][1000 genomes]
rs7977486	0.86[YRI][hapmap];0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898757	chr12:10229281-10614641	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv832328	chr12:10398071-10620443	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv605	chr12:10448638-10494208	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv898759	chr12:10454556-10583365	Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:10454800-10474400	Weak transcription	Left Ventricle	heart
2	chr12:10461200-10467400	Transcr. at gene 5' and 3'	Primary Natural Killer cells fromperipheralblood	blood
3	chr12:10462800-10471400	Weak transcription	Right Ventricle	heart
4	chr12:10463200-10470800	Weak transcription	Placenta	Placenta
5	chr12:10463800-10470600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr12:10466200-10469000	Weak transcription	Primary T cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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