Variant report

Variant	rs74060304
Chromosome Location	chr12:10438110-10438111
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11053742	0.85[AMR][1000 genomes]
rs7136070	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7297855	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7304129	1.00[AMR][1000 genomes]
rs7307026	0.83[AMR][1000 genomes]
rs74060319	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74060323	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74062112	1.00[AMR][1000 genomes]
rs74062120	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74062125	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs74062129	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74062166	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74062168	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7953567	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7977486	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898757	chr12:10229281-10614641	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv1054811	chr12:10350587-10440005	Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv832328	chr12:10398071-10620443	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	nsv557454	chr12:10417260-10440885	Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:10429000-10442000	Weak transcription	Left Ventricle	heart
2	chr12:10436000-10438200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr12:10436400-10441600	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr12:10437800-10438200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr12:10437800-10438800	Enhancers	Primary T cells from cord blood	blood
6	chr12:10437800-10439400	Enhancers	Primary T killer memory cells from peripheral blood	blood
7	chr12:10438000-10438600	Enhancers	Primary T helper naive cells from peripheral blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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