Variant report

Variant	rs60130117
Chromosome Location	chr12:10395345-10395346
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10845080	0.95[ASN][1000 genomes]
rs12578135	1.00[ASN][1000 genomes]
rs12581396	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2537802	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56726194	0.84[ASN][1000 genomes]
rs57401526	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58690639	1.00[ASN][1000 genomes]
rs7135451	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7297855	1.00[ASN][1000 genomes]
rs74062115	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7966462	1.00[ASN][1000 genomes]
rs9788026	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898757	chr12:10229281-10614641	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv1054811	chr12:10350587-10440005	Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:10376400-10397600	Weak transcription	Aorta	Aorta
2	chr12:10377200-10399000	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr12:10377800-10404400	Weak transcription	Left Ventricle	heart
4	chr12:10380200-10395800	Weak transcription	Thymus	Thymus
5	chr12:10387200-10396800	Weak transcription	Liver	Liver
6	chr12:10392000-10395600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr12:10392600-10396600	Weak transcription	Adipose Nuclei	Adipose
8	chr12:10392800-10396000	Strong transcription	Placenta	Placenta
9	chr12:10393400-10395400	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr12:10393400-10398200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr12:10394200-10396200	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr12:10394400-10395800	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr12:10394400-10396200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr12:10394400-10396400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr12:10394600-10396400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr12:10394800-10396200	Weak transcription	Primary T cells from cord blood	blood
17	chr12:10394800-10397200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
18	chr12:10394800-10397200	Enhancers	Primary T killer memory cells from peripheral blood	blood
19	chr12:10395000-10395600	Bivalent Enhancer	GM12878-XiMat	blood
20	chr12:10395000-10396400	Enhancers	Primary neutrophils fromperipheralblood	blood
21	chr12:10395000-10396400	Enhancers	Fetal Thymus	thymus
22	chr12:10395000-10397200	Enhancers	Dnd41	blood
23	chr12:10395200-10396200	Enhancers	Primary hematopoietic stem cells	blood
24	chr12:10395200-10396200	Enhancers	Monocytes-CD14+_RO01746	blood
25	chr12:10395200-10397200	Enhancers	Primary T helper naive cells from peripheral blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links