Variant report

Variant	rs7135451
Chromosome Location	chr12:10405730-10405731
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10845080	1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs10845092	1.00[AMR][1000 genomes]
rs12578135	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12581396	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1382266	0.86[YRI][hapmap];1.00[AMR][1000 genomes]
rs1564185	0.85[YRI][hapmap];1.00[AMR][1000 genomes]
rs2169747	1.00[AMR][1000 genomes]
rs2255542	1.00[AMR][1000 genomes]
rs2537784	1.00[AMR][1000 genomes]
rs2537785	0.91[YRI][hapmap];1.00[AMR][1000 genomes]
rs2537786	0.92[YRI][hapmap];1.00[AMR][1000 genomes]
rs2537788	1.00[AMR][1000 genomes]
rs2537794	0.92[YRI][hapmap];1.00[AMR][1000 genomes]
rs2537796	0.92[YRI][hapmap];1.00[AMR][1000 genomes]
rs2537797	0.85[YRI][hapmap];1.00[AMR][1000 genomes]
rs2537799	1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2537802	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2537803	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs2617126	0.91[YRI][hapmap];1.00[AMR][1000 genomes]
rs2617129	1.00[AMR][1000 genomes]
rs2617131	0.85[MKK][hapmap];0.91[YRI][hapmap];1.00[AMR][1000 genomes]
rs2617138	1.00[AMR][1000 genomes]
rs2617139	0.92[YRI][hapmap];1.00[AMR][1000 genomes]
rs2617140	1.00[AMR][1000 genomes]
rs2617143	1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2908451	1.00[AMR][1000 genomes]
rs3912116	0.91[YRI][hapmap];1.00[AMR][1000 genomes]
rs4764378	1.00[AMR][1000 genomes]
rs56726194	0.84[ASN][1000 genomes]
rs57401526	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58690639	1.00[ASN][1000 genomes]
rs60130117	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7297855	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7299590	0.81[MKK][hapmap]
rs74062115	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7954334	0.86[YRI][hapmap];1.00[AMR][1000 genomes]
rs7960005	1.00[AMR][1000 genomes]
rs7961145	1.00[AMR][1000 genomes]
rs7966462	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7966586	1.00[AMR][1000 genomes]
rs7972553	1.00[AMR][1000 genomes]
rs9788026	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898757	chr12:10229281-10614641	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv1054811	chr12:10350587-10440005	Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv832328	chr12:10398071-10620443	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:10398800-10436200	Weak transcription	Placenta	Placenta

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