Variant report
| Variant | rs2169747 |
|---|---|
| Chromosome Location | chr12:10419233-10419234 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs10845092 | 1.00[AMR][1000 genomes] |
| rs1382266 | 1.00[AMR][1000 genomes] |
| rs1564185 | 1.00[AMR][1000 genomes] |
| rs2255542 | 1.00[AMR][1000 genomes] |
| rs2537784 | 1.00[AMR][1000 genomes] |
| rs2537785 | 1.00[AMR][1000 genomes] |
| rs2537786 | 1.00[AMR][1000 genomes] |
| rs2537788 | 1.00[AMR][1000 genomes] |
| rs2537794 | 1.00[AMR][1000 genomes] |
| rs2537796 | 1.00[AMR][1000 genomes] |
| rs2537797 | 1.00[AMR][1000 genomes] |
| rs2537799 | 1.00[AMR][1000 genomes] |
| rs2537803 | 1.00[AMR][1000 genomes] |
| rs2617126 | 1.00[AMR][1000 genomes] |
| rs2617129 | 1.00[AMR][1000 genomes] |
| rs2617131 | 1.00[AMR][1000 genomes] |
| rs2617138 | 1.00[AMR][1000 genomes] |
| rs2617139 | 1.00[AMR][1000 genomes] |
| rs2617140 | 1.00[AMR][1000 genomes] |
| rs2617143 | 1.00[AMR][1000 genomes] |
| rs2908451 | 1.00[AMR][1000 genomes] |
| rs3912116 | 1.00[AMR][1000 genomes] |
| rs4764378 | 1.00[AMR][1000 genomes] |
| rs7135451 | 1.00[AMR][1000 genomes] |
| rs7954334 | 1.00[AMR][1000 genomes] |
| rs7960005 | 1.00[AMR][1000 genomes] |
| rs7961145 | 1.00[AMR][1000 genomes] |
| rs7966586 | 1.00[AMR][1000 genomes] |
| rs7972553 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv898757 | chr12:10229281-10614641 | Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 48 gene(s) | inside rSNPs | diseases |
| 2 | nsv1054811 | chr12:10350587-10440005 | Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 19 gene(s) | inside rSNPs | diseases |
| 3 | nsv832328 | chr12:10398071-10620443 | Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 25 gene(s) | inside rSNPs | diseases |
| 4 | nsv557454 | chr12:10417260-10440885 | Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:10398800-10436200 | Weak transcription | Placenta | Placenta |
