Variant report

Variant	rs2617139
Chromosome Location	chr12:10417586-10417587
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10845092	1.00[AMR][1000 genomes]
rs1382266	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1564185	0.93[LWK][hapmap];1.00[MKK][hapmap];0.92[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2169747	1.00[AMR][1000 genomes]
rs2255542	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2537784	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2537785	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2537786	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2537787	0.97[AFR][1000 genomes]
rs2537788	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2537794	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2537796	1.00[ASW][hapmap];0.93[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2537797	0.92[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2537799	0.92[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2537803	0.92[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2617126	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2617129	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2617131	1.00[ASW][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2617138	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2617140	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2617143	0.92[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2908451	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2927557	0.97[AFR][1000 genomes]
rs3912116	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4764378	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7135451	0.92[YRI][hapmap];1.00[AMR][1000 genomes]
rs7297895	0.81[AFR][1000 genomes]
rs7299590	1.00[ASW][hapmap];0.84[AFR][1000 genomes]
rs7308601	0.81[AFR][1000 genomes]
rs7954334	1.00[AMR][1000 genomes]
rs7960005	1.00[AMR][1000 genomes]
rs7961145	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7966586	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7972553	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898757	chr12:10229281-10614641	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv1054811	chr12:10350587-10440005	Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv832328	chr12:10398071-10620443	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	nsv557454	chr12:10417260-10440885	Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:10398800-10436200	Weak transcription	Placenta	Placenta

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